Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01841 ATGCCATTACTCCGTCCCGCCGCCGCCTCGTTGCCGGAAGTTTTTTCCCCACGACTCGCCGATAAGGGCCCTGTTATACCGGTACCCAATCTCGTTAAGTTTCTTGAGCGTCTTCAGGTTGTGGCTCTGAACTCGTTTGGGAAATTGGATTTTGATCTTAAATATTATGTTGATTTGTCTCTGAAATTCGATTTGAATTCTACCCAAATCGCTTTTGATGCCCTTGAACGATCCTCCAATGGCTCTGTTTCCGTTGAGAATTTGAGGACATTCATTTCGAACTATTTCCATAGTGCCGGTACCGACTTGGTTTACTCTAATCCGGTCGATTTTAACCCTCAGCCTGATGGGTTTTTGCCTAAAGTTGAGAATGTGGAGGTTAGAACTTGGGCTTTAGATATTCATAATTTTTGGAAGAATCTTAGCCGTAGAGTCTCTGATGATCTCATTCATCATCCTGATACCCACACTTTGCTGCCGTTGCCGGAGCCTGTTGTCGTTCCGGGATCCAGATTCCGGGAAATATACTATTGGGATTCTTATTGGATTATCAGAGGTTTGTTAGCTAGTAAAATGTATGATACTGCTAAGGGAATTGTTATTAATCTCATTTCGATGATCGATGAATTTGGCCATGTTCTTAATGGTGCCAGATCTTATTACACTAACAGAAGTCAGCCTCCCCTTTTGAGTTCCATGGTTTATGACATATACCTTAGGACTGGGGATTTAGAGTTTGTGAGAAATTCACTCCCAGCTTTAATCAAAGAGCACAAGTTTTGGAATTCAGGATTCCATTCAGTTACTGTCCAAAATGGAAATGGAAATCACTCTTTGTCTAGGTACTATGCAATGTGGAACGAACCGAGGCCGGAATCTTCGCTGGTGGATGAGAAACTTGCCTCGAAGTTTGCGAATAACTATGAAAAAAAGCATCTATACCGTGAAATCGCATCAGCAGCCGAATCCGGTTGGGATTTCAGTTCAAGATGGATGAGGGATTCGACAGACTTATCAACTTTGGCTACAACTTCAATCTTGCCAGTTGATCTCAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCCGTTGGAGATTACTGCACGGCAGAACACTTTTTTGAGGCCTCTCTAGTTAGAAAGAAGACAATCAACTCTATTTTTTGGAATTCGGAGAAGGGACAATGGCTTGATTACTGGCTTGATAACGGCTCATACAAGGGTGCTCATTCATGGAATGCTCGAAACCAGAACCAGAACATATACGCTTCAAACTTCATTCCCTTGTGGATCGAATCATTTTACTCCGATAGCAGACAAATGAAGAAAGTTTTGAAAAGTTTACGGAACTCAGGCTTGTTGTGCAATGCTGGGATTGCAACTTCAGTGATTAATTCGGGGGAACAGTGGGATTTTCCAAACGGTTGGGCGCCAATCCAACACATGATCGTCGAGGGACTGGCAAGATCCGAATTGCCAGAAGCAAAGGCATTGGCCGAGGACATCGCCGCCAGATGGCTTCGAACCAACTATGTAGCTTACAAGCACACGGGATTTATGCATGAGAAGTATGATGTCCAAAAGTGTGGAGACTTCGGTGGAGGAGGTGAATACGTCCCTCAGACTGGCTTTGGATGGTCAAATGGAGTTGTTTTGGCATTTCTTGAAGAGTTTGGATGGCCAAAAGATCAAAAGATAGACTGCTATTTACCTTCTTAA 1734 43.08 MPLLRPAAASLPEVFSPRLADKGPVIPVPNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQIAFDALERSSNGSVSVENLRTFISNYFHSAGTDLVYSNPVDFNPQPDGFLPKVENVEVRTWALDIHNFWKNLSRRVSDDLIHHPDTHTLLPLPEPVVVPGSRFREIYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVRNSLPALIKEHKFWNSGFHSVTVQNGNGNHSLSRYYAMWNEPRPESSLVDEKLASKFANNYEKKHLYREIASAAESGWDFSSRWMRDSTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHSWNARNQNQNIYASNFIPLWIESFYSDSRQMKKVLKSLRNSGLLCNAGIATSVINSGEQWDFPNGWAPIQHMIVEGLARSELPEAKALAEDIAARWLRTNYVAYKHTGFMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPKDQKIDCYLPS 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22653627 22657086 + MELO3C005751.2.1 Cme09g01841 338701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01841 577 PANTHER TREHALASE 38 573 - -
Cme09g01841 577 ProSitePatterns Trehalase signature 2. 474 483 IPR018232 GO:0004555|GO:0005991
Cme09g01841 577 SUPERFAMILY Six-hairpin glycosidases 46 566 IPR008928 GO:0005975
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 210 228 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 279 296 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 314 331 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 346 363 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 389 405 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 467 483 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PRINTS Glycosyl hydrolase family 37 signature 547 560 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 Gene3D - 38 573 IPR012341 GO:0005975
Cme09g01841 577 Pfam Trehalase 49 564 IPR001661 GO:0004555|GO:0005991
Cme09g01841 577 PANTHER TREHALASE 38 573 IPR001661 GO:0004555|GO:0005991
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01841 K01194 TREH, treA, treF; alpha,alpha-trehalase [EC:3.2.1.28] - csv:101208719 1148.27
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme07g00497 . 83 618 Trehalose Biosynthesis Gene Families AT1G17000 58.8 5.7e-177 618.2
Cme12g01248 . 93 613 Trehalose Biosynthesis Gene Families AT1G17000 57.0 9.1e-175 610.9
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38