Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01852 ATGGGTTTGCCTCAAAGTCCTTCACCTCCTCATCTTTACCCACAAGCACTTCAATTAAAGCTTTATCAAGCATTCATATTCTCCATTCCAATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTATTTGTTTTATCTCAAGAGAAGAGCTTCCTCTCTTTCTTCTTCTTCATCTTCTTCATCTCCTCCAATTCTACCAACTTCTTCCAATAATACTCTCACTCTCTATGTTACTACCGCTTGTCAAGTGGATTTGAAGGCTGATAATCTCATTGACAAACTTCCCAAGATCCAATTCAATGAAGAACTGAAGATTAGAGATTCTTTGTGTTGCGTCTGCCTTGGAGAATTCGAGATAAAAGAAGAATTGTTGCAAGTCCCATCATGCAAACATGTGTTTCATATTGATTGCATGAATCACTGGCTCATCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCGACAACCCAATGCTCTGATCCGACCGTAATCGCACCACCCCCGCCACCGCCACTGCCACTGCCACGGGCTGGCTCATCAGAGCTTTCGTTGACTTCAGACCACAGTGCAGAGATGCGATCCTATTCGCTCTAA 603 43.12 MGLPQSPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSPPILPTSSNNTLTLYVTTACQVDLKADNLIDKLPKIQFNEELKIRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTQCSDPTVIAPPPPPPLPLPRAGSSELSLTSDHSAEMRSYSL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22741769 22744190 + MELO3C005760.2.1 Cme09g01852 338712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01852 200 MobiDBLite consensus disorder prediction 182 200 - -
Cme09g01852 200 SMART ring_2 110 151 IPR001841 -
Cme09g01852 200 MobiDBLite consensus disorder prediction 167 200 - -
Cme09g01852 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 157 IPR013083 -
Cme09g01852 200 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Cme09g01852 200 SUPERFAMILY RING/U-box 90 160 - -
Cme09g01852 200 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 161 - -
Cme09g01852 200 Pfam Ring finger domain 110 152 IPR001841 -
Cme09g01852 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 5 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01852 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - csv:101207251 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00120 Cme-Chr9:891745 Cme09g01852 Cme-Chr9:22741769 4.13E-27 dispersed
Cme09g01852 Cme-Chr9:22741769 Cme02g01396 Cme-Chr2:20149615 8.79E-16 dispersed
Cme09g01852 Cme-Chr9:22741769 Cme09g00360 Cme-Chr9:3084963 3.49E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g184 . . . Bda08g00453 . . . . . . Cma02g00920 Cma15g01289 Car02g00670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 Cmo15g01360 . . . . . Cpe13g00098 . . . . . . . . . . . . . . . . . Cme09g01852
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32