Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01853 ATGACTTATAATGGAGGAGATTCGTATAGGCAGTCTTGTGTTTCGGCCCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCACGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGACTCGAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCGGATCATGAATCGGACGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAAATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCACCTAGACCAGTCGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACTAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCCACCGAGTGCCTACCTCCTCTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATATGAGTGGAGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCCAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTAGGGGTAAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACTACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTCAATAAATACTTGGAAGCTGTCAATAACAAGTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTACAATGGGATGAACAAACATCTATTCTAAGACCTGAAAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAACAGTCACAGGTCTATCTCAACCCATTTCAAAAAATAAAAGGCCTCGACAACCAACTCCAGCTCATGATTGTGCTGATTTGACTAAGCCAACACATTGGGATTCTGGATTGGCACAGTCACATGATGGTAAACAATGCAGTAATGCAGCTGAAGGCAGAAAAGGTGAAAATAATGAATCGTGTCACCATAGAGAGACAGATGCTATCAGCAACAGCTCATGTGTATCAAGAACACAGACTGATACCTGGCTATCTCCTACTCAATCGAATAGTTATAAACACCCAGTAAATGACATGGCGCAGGATTCCAAAACTGTCCCTAGCAGTGGTTGGTCTTTTCTATCAGGAACTCCAACCTCTCACTTGGTTAAGTTAAGTGATGATCAAATACTTGACCCCATTGAAAATGGGAAGAAAGGTGAAACGGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTGCTGAGAAAGCATCTTCTCAACCAAGCAGTGGGTCTAGCGACACAGATGGGCGCATCAGTACCTTATCTGTGGCTCAGTCCGATCCAAAATCTGACAACTTAGAAGTCTCTATAGAAAGAAAATCAGAACCATCACAAGCATCTCTGAAGGATATTCAATGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCTCATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATATTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCCGTAACATGGTGAGAAGAATTTTTATATGCTCTAAGGAGCAAGTGAAGAATATGAGCTCAGGAAGCAAGCAGCTGACATCAATAGAAGTTGAAGGAGATGTAGTAACCCCAGTCTCCCCTGCAGTTTGA 2076 43.93 MTYNGGDSYRQSCVSAQGCGRDDLYMELWRACAGPLVDIPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLDSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSMDPCPPEPPRPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSILRPERVSPWDIEPLTSSTVTGLSQPISKNKRPRQPTPAHDCADLTKPTHWDSGLAQSHDGKQCSNAAEGRKGENNESCHHRETDAISNSSCVSRTQTDTWLSPTQSNSYKHPVNDMAQDSKTVPSSGWSFLSGTPTSHLVKLSDDQILDPIENGKKGETVASCRLFGIDLNHLAAEKASSQPSSGSSDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKDIQCNQSSSANTRSRTKVLMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFRNMVRRIFICSKEQVKNMSSGSKQLTSIEVEGDVVTPVSPAV 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22743745 22750722 - MELO3C005761.2.1 Cme09g01853 338713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01853 691 Gene3D - 290 363 - -
Cme09g01853 691 MobiDBLite consensus disorder prediction 427 468 - -
Cme09g01853 691 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cme09g01853 691 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Cme09g01853 691 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Cme09g01853 691 MobiDBLite consensus disorder prediction 360 468 - -
Cme09g01853 691 SMART B3_2 129 231 IPR003340 GO:0003677
Cme09g01853 691 MobiDBLite consensus disorder prediction 393 414 - -
Cme09g01853 691 MobiDBLite consensus disorder prediction 520 580 - -
Cme09g01853 691 MobiDBLite consensus disorder prediction 360 374 - -
Cme09g01853 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme09g01853 691 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cme09g01853 691 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme09g01853 691 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cme09g01853 691 SUPERFAMILY CAD & PB1 domains 575 656 - -
Cme09g01853 691 MobiDBLite consensus disorder prediction 557 580 - -
Cme09g01853 691 Gene3D - 126 231 IPR015300 -
Cme09g01853 691 MobiDBLite consensus disorder prediction 520 549 - -
Cme09g01853 691 PANTHER AUXIN RESPONSE FACTOR 9 19 678 - -
Cme09g01853 691 Pfam AUX/IAA family 626 658 IPR033389 -
Cme09g01853 691 Pfam AUX/IAA family 570 616 IPR033389 -
Cme09g01853 691 Gene3D - 575 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01536 Cme-Chr7:21213391 Cme09g01853 Cme-Chr9:22743745 0 dispersed
Cme08g00111 Cme-Chr8:821892 Cme09g01853 Cme-Chr9:22743745 1.01E-115 dispersed
Cme09g01853 Cme-Chr9:22743745 Cme10g01685 Cme-Chr10:23353579 0 dispersed
Cme09g01853 Cme-Chr9:22743745 Cme12g01152 Cme-Chr12:19599255 1.59E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41992 PF02362 B3 1.90E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01853 K14486 - csv:101209208 1368.21