Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01866 ATGGGGGAGAAGTTCCACATGAAACCATCTGAGAAAAAGAAAAGAAAAGAAAAGAAAACAAACATTCTTTTTTTTCAGCTTTTGATAATCTCATCACCACTTTCAAGGTTACAACTTTACTCTTTTTCTAACAAAACCCTTCCAAAATTTTCTTCATTAATTTCCATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCGATTGAAGAAATTGTGACAAACACATGTCCGAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAGAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAACACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTTCTTCTTCTTCTAATTCTTCATCATCTACATCTCCCACACAACCTACTTCTTCTTCTCAACCTAATTTCCCCAAGAAAATTCTTGACCATCAGCTCCCTCAAAACCCTAAAATCACTCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCATCATCATTTCACCACCAGTAACAACAACCTCTCCGAAATGATTCTCGTCGGTAGTAACCCTTCGATTAATAATAATGCCACCTCTTCCTCGGCTTCTGCGACGACGACAATGTCGTCGCCGCCCCCATCACAACCTTCTGTGATGGAGCTTCTCACCGGGATGGCGAATAACAACAACAACAACTCTAGTAGGGGTTTGAATTGTTTCGTTCCGATGTCGTCGGTTGTTGTCCCTGATCCTAGCTCTGTTTACACTGGAGGGTTTCCTGATCTTCAAGATCAATTCAAGCCGAGCCTTGGATTCTCTCTCGATGGATATGGTGTCGTCTCGACTGAGGCGGGTAATGGGGCGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGATCAACAAGGGAAAGAGCAAGGAAATGATCATAATTCAAGTGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 1116 41.31 MGEKFHMKPSEKKKRKEKKTNILFFQLLIISSPLSRLQLYSFSNKTLPKFSSLISMDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSNSSSSTSPTQPTSSSQPNFPKKILDHQLPQNPKITPSQDLNLFFPPSNNQDHHHFTTSNNNLSEMILVGSNPSINNNATSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNSSRGLNCFVPMSSVVVPDPSSVYTGGFPDLQDQFKPSLGFSLDGYGVVSTEAGNGAGRLMQLPFEDLKQGSNGVDQQGKEQGNDHNSSGYWSGMLGGGSW 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22846755 22849025 + MELO3C005774.2.1 Cme09g01866 338726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01866 371 MobiDBLite consensus disorder prediction 149 179 - -
Cme09g01866 371 ProSitePatterns Zinc finger Dof-type signature. 100 136 IPR003851 GO:0003677|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 339 371 - -
Cme09g01866 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 368 IPR045174 GO:0003700|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 188 214 - -
Cme09g01866 371 MobiDBLite consensus disorder prediction 139 214 - -
Cme09g01866 371 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 56 368 - -
Cme09g01866 371 MobiDBLite consensus disorder prediction 341 365 - -
Cme09g01866 371 ProSiteProfiles Zinc finger Dof-type profile. 98 152 IPR003851 GO:0003677|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 234 256 - -
Cme09g01866 371 Pfam Dof domain, zinc finger 96 152 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01866 - - - cmo:103482848 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02321 Cme-Chr4:30156803 Cme09g01866 Cme-Chr9:22846755 6.37E-32 dispersed
Cme06g00082 Cme-Chr6:526322 Cme09g01866 Cme-Chr9:22846755 4.73E-36 dispersed
Cme06g01166 Cme-Chr6:9078957 Cme09g01866 Cme-Chr9:22846755 2.15E-39 dispersed
Cme09g01866 Cme-Chr9:22846755 Cme11g01764 Cme-Chr11:25878348 2.81E-39 dispersed
Cme09g01866 Cme-Chr9:22846755 Cme09g02002 Cme-Chr9:23789471 4.33E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41995 PF02701 zf-Dof 7.20E-33 No_clan Cme TF