Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01866 ATGGGGGAGAAGTTCCACATGAAACCATCTGAGAAAAAGAAAAGAAAAGAAAAGAAAACAAACATTCTTTTTTTTCAGCTTTTGATAATCTCATCACCACTTTCAAGGTTACAACTTTACTCTTTTTCTAACAAAACCCTTCCAAAATTTTCTTCATTAATTTCCATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCGATTGAAGAAATTGTGACAAACACATGTCCGAAACCAAGTGTTTCAATTTTAGAGAGAAAAATTAGACCACAGAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAACACAAAGTTTTGTTATTACAATAATTATAGTCTCACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCTTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGAAAAAACAAAAGACCTTCTTCTTCTTCTTCTAATTCTTCATCATCTACATCTCCCACACAACCTACTTCTTCTTCTCAACCTAATTTCCCCAAGAAAATTCTTGACCATCAGCTCCCTCAAAACCCTAAAATCACTCCCTCCCAAGATCTCAACTTGTTTTTTCCACCCTCAAACAATCAAGATCATCATCATTTCACCACCAGTAACAACAACCTCTCCGAAATGATTCTCGTCGGTAGTAACCCTTCGATTAATAATAATGCCACCTCTTCCTCGGCTTCTGCGACGACGACAATGTCGTCGCCGCCCCCATCACAACCTTCTGTGATGGAGCTTCTCACCGGGATGGCGAATAACAACAACAACAACTCTAGTAGGGGTTTGAATTGTTTCGTTCCGATGTCGTCGGTTGTTGTCCCTGATCCTAGCTCTGTTTACACTGGAGGGTTTCCTGATCTTCAAGATCAATTCAAGCCGAGCCTTGGATTCTCTCTCGATGGATATGGTGTCGTCTCGACTGAGGCGGGTAATGGGGCGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGATCAACAAGGGAAAGAGCAAGGAAATGATCATAATTCAAGTGGGTATTGGAGTGGAATGTTGGGTGGAGGATCATGGTAA 1116 41.31 MGEKFHMKPSEKKKRKEKKTNILFFQLLIISSPLSRLQLYSFSNKTLPKFSSLISMDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSNSSSSTSPTQPTSSSQPNFPKKILDHQLPQNPKITPSQDLNLFFPPSNNQDHHHFTTSNNNLSEMILVGSNPSINNNATSSSASATTTMSSPPPSQPSVMELLTGMANNNNNNSSRGLNCFVPMSSVVVPDPSSVYTGGFPDLQDQFKPSLGFSLDGYGVVSTEAGNGAGRLMQLPFEDLKQGSNGVDQQGKEQGNDHNSSGYWSGMLGGGSW 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22846755 22849025 + MELO3C005774.2.1 Cme09g01866 338726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01866 371 MobiDBLite consensus disorder prediction 149 179 - -
Cme09g01866 371 ProSitePatterns Zinc finger Dof-type signature. 100 136 IPR003851 GO:0003677|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 339 371 - -
Cme09g01866 371 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 368 IPR045174 GO:0003700|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 188 214 - -
Cme09g01866 371 MobiDBLite consensus disorder prediction 139 214 - -
Cme09g01866 371 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 56 368 - -
Cme09g01866 371 MobiDBLite consensus disorder prediction 341 365 - -
Cme09g01866 371 ProSiteProfiles Zinc finger Dof-type profile. 98 152 IPR003851 GO:0003677|GO:0006355
Cme09g01866 371 MobiDBLite consensus disorder prediction 234 256 - -
Cme09g01866 371 Pfam Dof domain, zinc finger 96 152 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02321 Cme-Chr4:30156803 Cme09g01866 Cme-Chr9:22846755 6.37E-32 dispersed
Cme06g00082 Cme-Chr6:526322 Cme09g01866 Cme-Chr9:22846755 4.73E-36 dispersed
Cme06g01166 Cme-Chr6:9078957 Cme09g01866 Cme-Chr9:22846755 2.15E-39 dispersed
Cme09g01866 Cme-Chr9:22846755 Cme11g01764 Cme-Chr11:25878348 2.81E-39 dispersed
Cme09g01866 Cme-Chr9:22846755 Cme09g02002 Cme-Chr9:23789471 4.33E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41995 PF02701 zf-Dof 7.20E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01866 - - cmo:103482848 563.918