Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01875 ATGGCGGTTGAGATTGCGAAGGAGTCATTCGACGTTAATCAAACTATTGTCAAAGACAGCAAAGAATACGACAACAACCCGCAATGGAAGAGGCTTCAACCATGGACGAAGCAAATAACAGTTAGAGGAGTAATAGCGAGTGCCATTATTGGGAGCCTCTATAGTATCATAACCATGAAACTAAACCTTACTATTGGGCTCGTCCCAAATCTCAACGTCTCTGCTGCTCTTCTTGCGTTCGTCTTTGTTCGAGTGTGGACTAAAATCCTTCAAAAAGTTGGGTTTGTAACCAAACCCTTCACTCGTCAAGAGAACACTATGATTCAGACATGTGCGGTTGCTTGTTACAGTATCGCAGTTGGAGGTGGATTTGGTTCGTATCTGTTGGGAATGAGCAGAAAGATATATGAATTATCAGGAGTAAACACTGAAGCAAATTCTTCATACAGTGTGAAAGAGCCTGCACTGGGATGGATGACTGCATTTCTCTTCGTTGTTTGCTTCGTGGGTCTTTTTGTTTTGATTCCTCTTAGGAAGGTTATGATAGTGGACCTGCAATTGACATTTCCAAGTGGCATGGCAACAGCAGTTATGATCAATGGATTCCACAATCAGGGTGATGAGATGGCAAAATTCTACTTCGATTTTGATTCGACTTTTGTGGGAGCAGGGATGATTTGTTCCCACCTAGTTAACTTGTCATTACTTCTAGGAGCCGTCCTATCTTATGGCTTAATGTGGCCTCTTCTTGATCTACTCAAAGGGGATTGGTATCCTGATAACTTGGATGAAAATGACATGAAAAGTTTATATGGATATAAGGTGTTTTTATCCGTTGCTCTGATTCTGGGGGATGGACTTTACAACTTCGTCAAGATTATTGCTACAACCATCATCAATATATACAAAGTCAAGAAAGCAAAAAAAGGTTTAGAACACAATGATGAGAAACCAACTATAGATAAAAATCAAGATGAAATCTTCTTGAGAGAAAACATCCCTTTATGGGTGGGAGTCATTGGCTACATAATCTTGGCAACACTATCCGCCATTGTTGTCCCACAAATGTTCCCTCAGCTCAAATGGTACTTCGTTATCGTCGCCTACATCCTCGCCCCTTCCCTTGCCTTCTGCAATGCTTATGGCGCTGGTCTCACCGACATCAACATGGCCTTCAACTATGGCAAAATCGCTCTCTTCATACTCGCCGCAATCAGTCCGAAACACGATGCCCTTATCGCCGGTCTAGCTGGCTGCGGTCTCATAACTTCCGTCGTCTCTGTTGGCTGCACTCTAATGCAAGATTTCAAAACAGCCCATTTGACCTACACCTCCCCAAGAGCCATGTTTGTCAGCCAGGTGATCGGTACAACAATCGGGTGCATCATGGCGCCACTAAGCTTCTTCCTGTTCTACAACGCGTTTGACGTGGGAAATCCAAAGGGGGAATTCAAGTCGCCATACGCTTTGATATATCGGAACATGGCGATTCTAGGAGTCGAGGGGGTATCGGCATTGCCAGAGCATTGCTTGCAAATGTGTTACGGGTTTTTCGGGTTCGCAATTGGGGTGAACATAGTGAAAGATTTCGTGGGTGGGAGGATTGGCAAGCTGATGCCAATACCCATGGTGATGGCGGTGCCGTTTCTGGTTGGTGGGTTTTTCACCATTGATATGTGTTTGGGGAGTTTAATTGTGTTCATTTGGGGTAAAATGAATAAGAAGAAGGCAGAGTTGATGTTGCCAGCTATAGCTTCAGGCTTGATTTGTGGGGAAGGACTTTGGGCTATACCATCCTCCTTTCTTGGTCTTGTTAAGATTAATCCTCCTATCTGTATGAAGTTTGTGCCCTCATAG 1857 43.94 MAVEIAKESFDVNQTIVKDSKEYDNNPQWKRLQPWTKQITVRGVIASAIIGSLYSIITMKLNLTIGLVPNLNVSAALLAFVFVRVWTKILQKVGFVTKPFTRQENTMIQTCAVACYSIAVGGGFGSYLLGMSRKIYELSGVNTEANSSYSVKEPALGWMTAFLFVVCFVGLFVLIPLRKVMIVDLQLTFPSGMATAVMINGFHNQGDEMAKFYFDFDSTFVGAGMICSHLVNLSLLLGAVLSYGLMWPLLDLLKGDWYPDNLDENDMKSLYGYKVFLSVALILGDGLYNFVKIIATTIINIYKVKKAKKGLEHNDEKPTIDKNQDEIFLRENIPLWVGVIGYIILATLSAIVVPQMFPQLKWYFVIVAYILAPSLAFCNAYGAGLTDINMAFNYGKIALFILAAISPKHDALIAGLAGCGLITSVVSVGCTLMQDFKTAHLTYTSPRAMFVSQVIGTTIGCIMAPLSFFLFYNAFDVGNPKGEFKSPYALIYRNMAILGVEGVSALPEHCLQMCYGFFGFAIGVNIVKDFVGGRIGKLMPIPMVMAVPFLVGGFFTIDMCLGSLIVFIWGKMNKKKAELMLPAIASGLICGEGLWAIPSSFLGLVKINPPICMKFVPS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22895387 22898806 + MELO3C027083.2.1 Cme09g01875 338735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01875 618 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 17 211 IPR045035 GO:0035673
Cme09g01875 618 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 212 617 IPR045035 GO:0035673
Cme09g01875 618 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 215 601 IPR004813 GO:0035673
Cme09g01875 618 Pfam OPT oligopeptide transporter protein 211 602 IPR004813 GO:0035673
Cme09g01875 618 Pfam OPT oligopeptide transporter protein 38 207 IPR004813 GO:0035673
Cme09g01875 618 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 17 211 - -
Cme09g01875 618 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 212 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01875 - - - csv:101207252 1150.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01171 Cme-Chr6:9116826 Cme09g01875 Cme-Chr9:22895387 0 dispersed
Cme09g01875 Cme-Chr9:22895387 Cme12g01791 Cme-Chr12:24434127 0 dispersed
Cme09g01875 Cme-Chr9:22895387 Cme09g01877 Cme-Chr9:22909146 0 proximal
Cme09g01875 Cme-Chr9:22895387 Cme09g01876 Cme-Chr9:22907252 1.31E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104