Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01879 GAACAATGTAATTTAATTGTAAGAAAACAAAAATGTAATCTTTTGAAATTTTTAATAACTTCAAAATATATTTTTCTAGAAGAAAAAGAAAAAAAATCCAACCAATATCAATCAACGGTCGATGACATCTCTGATCGGAACTTGGGCACCACACCGGCGGGGCCCTCCTCCGATCAGACTGCTATACAAATTCAAGATGATGACATGTTCATGACTCTTAATAATAATCACAGCCGTTCCTCACCCATCTCCAATATTCCGATTCCTTCTCATTCCCCACCAATGGCGAGAGCCTTCTTAGGCTCCACGTCTTCCTCTTCCCCACTAATCGCTTTACGCATCTCTTCCTTCACCCCATCATTTTTCTTAACCAATCAACGCCCCCGCTCCCTTCGTCCCACCACCGGGTCCGTCGTCGCTATGGCGGAGGTTCCGTCGGAGAAGCGCATTAAGCCCCACCCATCTCTCGAGGTCATCGGTGGAGGCTGCGATCAGTTCCTCCCAGCTTTTAAGGACTTGGATCTCCCCTATAAGCCTTTCCCTGTAATTGGGTCGAATCGCCATTTGGAGACCATTTTTGCTTCCTTTTTTAGGACTTGTCCCAGTGTTAACCTCCACCGGGAGTGTCTCCGTGCGGCAGATAATGGGACCGTTGCTCTCGATTGGGTCACCGGTGACGATCTCCGTTTGCCTCTTGATTCTCCTGTTCTTATTCTTCTGCCTGGTTTAACAGGAGGGAGTCAGGATTCATATGTAAGACACATGTTGGTTAGAGCTAGAGATCGTGGGTGGAGGGTTGTGGTTTTCAACAGCCGTGGATGTGGGAACAGCCCTGTTACCACTCCTCAGTTCTATTCGGCTTCATTTTTAGGAGATATGCGTGAAGTAGTTGCGCATGTTACTAAAAGATATCCCAAGGCTAATGTGTATGCTGTTGGCTGGTCACTTGGTGGTAACATTCTTGTTAATTATTTGGGACAGGATTCACTGACCTGTCCATTGTCTGGTGCTGTGTCTTTATGTAATCCATTCGATTTAATAGTTGCAGATGAGGACTTTCGCAAGGGCTTCAACAACGTCTATGATAAATCTCTGGCTAGAGCGTTACGTAAAATTTTCAACAAGCATGCTGCTCTCTTCACTGATATGCCTAGTGAATTCAATATACGCTTGGCTGCCAAAGCTAGAACTGTTAGAGACTATGATGATGCCTTAACCCGCGTTTCATTTGGTTTCAACACTGTGGATGAATACTACTCAAAGTCTAGCAGTTCAAAGTTCATAAAAGATGTCAAAATTCCTTTGCTTTGTATCCAGGCAGCAAATGATCCAATTGCTCCAAACAGAGGAATCCCCCGAGAAGATATTAAGAATTTGACTAAAGATTCAAATGAAAATCCAAACTGTATGTTAATAGTAACACCGAGAGGTGGGCATCTAGGGTGGGTTGCAGGGCCCGGCGCTCCCCTTGGTTTTCCATGGACCGATCCTTTCGTGATCGATTTCCTCATGTATTTAGAAAACCAAAAATCCAAAGCCTCAGCTTCTTCTACAGATTTAACAACGGCAGAGAGATCGTTATTTTGA 1587 44.36 EQCNLIVRKQKCNLLKFLITSKYIFLEEKEKKSNQYQSTVDDISDRNLGTTPAGPSSDQTAIQIQDDDMFMTLNNNHSRSSPISNIPIPSHSPPMARAFLGSTSSSSPLIALRISSFTPSFFLTNQRPRSLRPTTGSVVAMAEVPSEKRIKPHPSLEVIGGGCDQFLPAFKDLDLPYKPFPVIGSNRHLETIFASFFRTCPSVNLHRECLRAADNGTVALDWVTGDDLRLPLDSPVLILLPGLTGGSQDSYVRHMLVRARDRGWRVVVFNSRGCGNSPVTTPQFYSASFLGDMREVVAHVTKRYPKANVYAVGWSLGGNILVNYLGQDSLTCPLSGAVSLCNPFDLIVADEDFRKGFNNVYDKSLARALRKIFNKHAALFTDMPSEFNIRLAAKARTVRDYDDALTRVSFGFNTVDEYYSKSSSSKFIKDVKIPLLCIQAANDPIAPNRGIPREDIKNLTKDSNENPNCMLIVTPRGGHLGWVAGPGAPLGFPWTDPFVIDFLMYLENQKSKASASSTDLTTAERSLF 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22915819 22919693 + MELO3C005785.2.1 Cme09g01879 338739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01879 528 MobiDBLite consensus disorder prediction 35 59 - -
Cme09g01879 528 ProSitePatterns Uncharacterized protein family UPF0017 signature. 402 443 IPR000952 -
Cme09g01879 528 Pfam alpha/beta hydrolase fold 235 451 IPR000073 -
Cme09g01879 528 Coils Coil 26 46 - -
Cme09g01879 528 PANTHER EMBRYOGENESIS-ASSOCIATED PROTEIN EMB8-LIKE 129 517 - -
Cme09g01879 528 SUPERFAMILY alpha/beta-Hydrolases 203 489 IPR029058 -
Cme09g01879 528 MobiDBLite consensus disorder prediction 37 59 - -
Cme09g01879 528 Gene3D alpha/beta hydrolase 207 489 IPR029058 -
Cme09g01879 528 PANTHER ABHYDROLASE DOMAIN-CONTAINING PROTEIN 129 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01879 - - - csv:101222809 851.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01879 Cme-Chr9:22915819 Cme10g00710 Cme-Chr10:4481191 7.79E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g237 . . . . . . . . . . Cma02g00942 . Car02g00690 . . . Cpe05g00772 . . . . . . . . . . . . . . Cone8ag0597 Cone12ag0591 . . . Csa05g00167 Chy09g01331 . . . . Bda09g00645 Bpe08g00896 . . . . . . . . . . . . Bhi12g00089 . . Lac11g1928 Hepe06g1439 . Lcy12g1523 Cla01g00148 Cam01g0153 Cec01g0149 Cco01g0155 Clacu01g0148 Cmu01g0148 Cre09g2358 Lsi09g00139 . . Cme09g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010186 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32