Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01883 ATGGAGGATGAGATGAATGATGATAATACTAATTCTCCAAGCTGGAAACTTTATGAAAACCCTTTTTATATTACCCCTTCTCATCATCATCATCACCGTCATCATCGTCATCAAACTTCTCATAAATCCTCCATTAACACCAACAACAACAACCAACTTCAATTTTATTGCTTGAAATTTTCTTCTTCTTCTTCTTCTAATTCTTGTGATCTATTTCCTACTAAAAGGCGAATGGATTCAGAGCTCGATCTCGCCCGAAGCCAGATCGTAGAGCTCAAGACCCAGCTTCGGTACGAACGCAAGGCTCGTAAAAAGCTCGAGTCTTTGACGAAGAGACTTGCTAAGGAACTTGATGAAGAGAGGAAACAAAGGGAAGCGATGGAAGGACTTTGTCAAGAACTTGCAAGAGAGATTTCTTCTCATGAAGCTCAGATAGATCTGATGAAGAAAGAGATTGAAGATGAGAGAAAGATGCTCAGGTTGGCTGAGGTTTTACGAGAAGAGAGAGTTCAAATGAAGCTTGCAGAAGTAAAAATTGTCTTCGAACATATGCTTTCAGAGATTGAATCAGGAACAACCACCAACAATAACACCACCACCACCGCCATTTTTTCCGACTTTTCTACCAAACTAAAACACACGGTTGCCGACAATAACCCGTCTGCGAATTCAGACAACAACAATGCCGATGTCGATGATGACGACGAATCTTCCCTAAGAGAATCAATGAGATCGGACGCTATCGCGTGCAGAAACATGGGGGTCCGAAGAAGTATCTCGCCGGAGATGGAAAATAATAATCCTCACATTGTAAGAGGAATTAAAGGGTTTGTGGAATTCCGGCGAGTGGTTCGAACAAAAGGGTCTAAATTAAGTAGAGATTCAGAGGCGAAATTGGAGTGTCAAAAAGCTCAGCTTAAAGTTCTTCTCAAACAAAAACATACTCTCAGATCCGACAACCTCATTATTACCTAA 975 41.03 MEDEMNDDNTNSPSWKLYENPFYITPSHHHHHRHHRHQTSHKSSINTNNNNQLQFYCLKFSSSSSSNSCDLFPTKRRMDSELDLARSQIVELKTQLRYERKARKKLESLTKRLAKELDEERKQREAMEGLCQELAREISSHEAQIDLMKKEIEDERKMLRLAEVLREERVQMKLAEVKIVFEHMLSEIESGTTTNNNTTTTAIFSDFSTKLKHTVADNNPSANSDNNNADVDDDDESSLRESMRSDAIACRNMGVRRSISPEMENNNPHIVRGIKGFVEFRRVVRTKGSKLSRDSEAKLECQKAQLKVLLKQKHTLRSDNLIIT 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22964828 22967662 + MELO3C005789.2.1 Cme09g01883 338743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01883 324 Coils Coil 75 95 - -
Cme09g01883 324 Coils Coil 99 158 - -
Cme09g01883 324 MobiDBLite consensus disorder prediction 26 47 - -
Cme09g01883 324 MobiDBLite consensus disorder prediction 27 41 - -
Cme09g01883 324 MobiDBLite consensus disorder prediction 215 242 - -
Cme09g01883 324 PANTHER GB|AAF24581.1 4 316 IPR043424 -
Cme09g01883 324 PANTHER PROTEIN BRANCHLESS TRICHOME 4 316 IPR040209 GO:0010091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01883 - - - cmo:103482864 559.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02365 Cme-Chr4:30446157 Cme09g01883 Cme-Chr9:22964828 1.14E-06 dispersed
Cme09g01883 Cme-Chr9:22964828 Cme05g00251 Cme-Chr5:1842038 4.68E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g248 . . . . . . . . . . . Cma15g01316 Car02g00692 Car15g01184 . . Cpe05g00770 . . . . . . . . . . . . . . . . . . . Csa05g00162 Chy09g01335 . . Blo19g00136 . Bda09g00636 Bpe08g00904 . . . . . Cmo15g01381 . . . . . . Bhi12g00298 . . . . . Lcy12g1621 Cla01g00144 Cam01g0149 Cec01g0145 Cco01g0151 Clacu01g0144 Cmu01g0144 Cre09g2362 Lsi09g00135 . . Cme09g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011576 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30