Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01887 ATGACCGTTCCTGCTTCCGGTTTTATCATGGAAAACGGCGGATCAAGCTGTCTCCCTCTCCCCCCAGATGTTGAGAATCGGATCGTCTCCGAATTGGTGAATCAATCTGAGTCTAATTTGAAAGAAGGCAATCCCTATTATGTTATTTCTAATCGGTGGTTTAGAAGATGGCAATTATATGTTGGACTGTCTACTGATGAATTTTCTAGCGAAGATCATTCCTCTGATTCCCAACACTGTAATATGGTTCCTTCAAACGTTGTTGAAAGGCCAGGTCCTATTGATAATTCAGATATTATCATTAATGGAAGTGATTCTTCCGAGAATAATGATTTAGAGCTGAAAAGTTTTTTGGAGGAACGTCGGGATTATGTATTGGTTCCTAGTGAAGTGTGGGAAAAGCTCCATGATTGGTACAAAGGAGGCCCACCGATACCAAGAAAGATGATATCTCAAGGTGTCAATCAAAGGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATCGATGCTAGAGATGGAAGTGAATGTACCGTTCGATTGAGCAAGAAGGCCACCGTAATTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAATAAAGCAAGAAAAGGCGCGTATATTTGACTACTTTAACCAGCAGAAACAATCAATATTGGATGGGACAAGCCAAACCCTTGAAGAACTAAACCTGCAGATGAATCAACATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACTGGCATGGATGCCACTCGAAATGAGTTAGCTTTGGTAGCCCTTGAACCATCAAGGTCACCTCTATCAATTGCAGGTGGGCCAGTGATGTCAAATGGGCATTCATCTGGTTATGGTTATCAGGGAAGTTCTTTTAGCACATCAGTTGCTGACATGGATGATAGAAACGATCTTAGTAATACTGCTAAGAGAAAAGAGAAAGGTGGCTTGGCAGGGTTGCAGAATTTAGGAAATACTTGTTTCATGAATAGTGCCCTTCAGTGTTTAGTTCACACGCCACCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGAGAATCCTTTGGGAATGCACGGAGAATTAGCCATTGCGTTTGGTGAATTGTTGAGGAAATTATGGTCTGGACAAACCACAATTGCACCACGCGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCTCAAGAACTTCTTGCCTTCTTACTGGACGGACTGCATGAAGATTTGAATCGAGTTAAACGGAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGTAGAAGTTGCTGAAGAGTGTTGGAGATACCATAAAGCACGAAATGATTCTTTAATTGTGGATGTTTGTCAAGGTCAATATAAATCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACCCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTTCAAAGACATGGTTGCACCAAAGATCTCACCCATGCCTTAGCTACTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTACTTGCGGAGGTCTATGATCACCGTATTTACCGATATTTGGATAACCCTCTTGAATCTTTAACTTCAGTTAAAGATGAAGAGTATCTTGTTGCCTATCGCCTTCCGCAAAGGGAATCAGGAAGACCAAAGCTAGAGATCATCCACAGATCTCTGGAAAAATGCCCCATGGAACGTGTGAAAGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGAGAAGATTTTCACAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTACCCTTGAGAAGAACATACTCTTCAACTAAATCTAATGGTAGCAAAGAGAATGGCTTTGTTTCTGAAATGAATGATGAACCTGCCAACTGCAGTCCTCAGTCTGTTTCAAGGAGCCAAGCAGTTGACATTGAAGTAGAGGAAGCATCTGAAAACGAGCCATCCTTTCAACTTTTTTTAACCGATGATAGGAGTTTGAGCTGCAAGCCAATTGAGAAGGATTCTGCTATAAAATATGGTCCACTTGTAAAGGTTTTCTTAGATTGGACCGACAAAGAACATGAATTATATGATGTAAGCTACATCAAGGATCTTCCTCCTGTCCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTATTTTCTTGCTTGGAAGCATTCCTCACTGAAGAACCTTTAGGTCCCGATGATATGTGGTACTGCCCTAGGTGCAAAGAGCATAGACAGGCTACCAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTCCATCTGAAACGTTTTTCATACAGCAGATACCTTAAAAACAAACTCGATACCTTTGTTGATTTCCCCATTCACAATCTTGATTTGAGCAAATATGTCAAAAGCAATGATGGAAAATCTTACTTGTACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGTGGTGGGCACTACACTGCTTACGCGAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGCCAAGTTTCTCCGGTTGGTGAAGAAGAGATCAAAACGTCAGCTGCTTATTTGTTGTTCTATCAAAGAGTCGAAACTTGA 2748 40.98 MTVPASGFIMENGGSSCLPLPPDVENRIVSELVNQSESNLKEGNPYYVISNRWFRRWQLYVGLSTDEFSSEDHSSDSQHCNMVPSNVVERPGPIDNSDIIINGSDSSENNDLELKSFLEERRDYVLVPSEVWEKLHDWYKGGPPIPRKMISQGVNQRNFSVEVYLLCLKLIDARDGSECTVRLSKKATVIDLREKVFALKGIKQEKARIFDYFNQQKQSILDGTSQTLEELNLQMNQHILLEVDGPTPQTGMDATRNELALVALEPSRSPLSIAGGPVMSNGHSSGYGYQGSSFSTSVADMDDRNDLSNTAKRKEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELAIAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDVEVAEECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGCTKDLTHALATACCLKSDENLLLAEVYDHRIYRYLDNPLESLTSVKDEEYLVAYRLPQRESGRPKLEIIHRSLEKCPMERVKGMERKLFGTPLVTYLGEDFHSGADINAAVSKILLPLRRTYSSTKSNGSKENGFVSEMNDEPANCSPQSVSRSQAVDIEVEEASENEPSFQLFLTDDRSLSCKPIEKDSAIKYGPLVKVFLDWTDKEHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSQVSPVGEEEIKTSAAYLLFYQRVET 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23016520 23023642 + MELO3C005793.2.1 Cme09g01887 338747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01887 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 855 872 IPR018200 GO:0004843|GO:0006511
Cme09g01887 915 Gene3D - 9 163 IPR035927 -
Cme09g01887 915 SUPERFAMILY DUSP-like 19 150 IPR035927 -
Cme09g01887 915 SMART dusp 39 153 IPR006615 GO:0004843
Cme09g01887 915 Gene3D - 164 248 - -
Cme09g01887 915 Gene3D Cysteine proteinases 639 915 - -
Cme09g01887 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 914 - -
Cme09g01887 915 SUPERFAMILY Cysteine proteinases 318 913 IPR038765 -
Cme09g01887 915 SUPERFAMILY Ubiquitin-like 168 243 IPR029071 -
Cme09g01887 915 Pfam Ubiquitin carboxyl-terminal hydrolase 321 910 IPR001394 GO:0004843|GO:0016579
Cme09g01887 915 Gene3D Cysteine proteinases 303 515 - -
Cme09g01887 915 CDD Peptidase_C19R 758 911 - -
Cme09g01887 915 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Cme09g01887 915 ProSiteProfiles DUSP domain profile. 20 150 IPR006615 GO:0004843
Cme09g01887 915 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 16 914 - -
Cme09g01887 915 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 913 IPR028889 -
Cme09g01887 915 MobiDBLite consensus disorder prediction 654 680 - -
Cme09g01887 915 Pfam DUSP domain 43 150 IPR006615 GO:0004843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01887 - - - csv:101208487 1771.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02307 Cme-Chr4:30019193 Cme09g01887 Cme-Chr9:23016520 0 dispersed
Cme09g01887 Cme-Chr9:23016520 Cme04g00241 Cme-Chr4:1900973 1.19E-09 dispersed
Cme09g01887 Cme-Chr9:23016520 Cme05g00233 Cme-Chr5:1679322 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40