Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01901 ATGAATTTTGGAGTTAATACACTCCAAAATCACCATCTTCAACCTAGAAATAGGTTAGATTTGATCATGATGGAGCCTCCAGAGGCGGAGGAGGAAGCCGGTGGTGGTTCTAACAGCGGCAGTGGCAGCGGCGGAAGAGGAGGAGAAGTTGTTGAGAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGTAAATTGAATCGTCTTGTAATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTCTTAAACTTCGAAGATCGTAACGGAAAATCGTGGCGATTTCGTTACTCCTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGTTGGAGTCGTTTCGTCAAGGAGAAACGCCTTGACGCTGGCGATATTGTCTCATTTCAACGTGGAATTGGTGAAATTGGAAGAGATCGTCTTTACATCGACTGGCGTCGTCGTCCTGAACTCCCCCTCCATCACTACCCCATCACAACCACCACCACCGCCATCCGACCGAGCATCGTCATACCAAGCGGCAGTGGTGCTACTGCCGCTTGGGGGCCATTAGTCTGGCAGCCCCTCGGCGTAACAACAGCTGGATACCATCATCAGCCAGCTGCCGTAACGCCGCGGGACCACACACACTTGCCGCGAAACAACAACAACAGTAACAACAACAATGGTAATGGTATGTGTTGTCCTTATGGATATGGGAGTTCTGGTGTTGAAACAACAAGTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAAATCATCAAGAAGAGTAATTGGTACTCCAAGATTAGGGGAAGATCAAGAATTGGAATTGGAAATGGATAGGAATTTTAATAATTATCAGATGCAGCAAGAGTATTGTAGTAATGGTGGGGGTGGTGCTTCAATGGTGGTCCTTCAAGGAAATTATAGTATGGAAAATCATCATCATCATCATCAAAAATTAAATAATAATAACAATAATAATTATAGTGAAGAAGATACACCAGTGAAAAAATCAAGATTAAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGAATGTGATTTATTATTATCTACAAACCCCAAAACCACTACTTCTACCACTCAATTCCAATTGCCTTCTCCTTCAATTTACAAGTAA 1194 43.22 MNFGVNTLQNHHLQPRNRLDLIMMEPPEAEEEAGGGSNSGSGSGGRGGEVVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGIGEIGRDRLYIDWRRRPELPLHHYPITTTTTAIRPSIVIPSGSGATAAWGPLVWQPLGVTTAGYHHQPAAVTPRDHTHLPRNNNNSNNNNGNGMCCPYGYGSSGVETTSSGLVYLRTELGGKSSRRVIGTPRLGEDQELELEMDRNFNNYQMQQEYCSNGGGGASMVVLQGNYSMENHHHHHQKLNNNNNNNYSEEDTPVKKSRLRLFGVNMEMESPISSPSSDECDLLLSTNPKTTTSTTQFQLPSPSIYK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23146679 23148025 - MELO3C005807.2.1 Cme09g01901 338761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01901 397 ProSiteProfiles B3 DNA-binding domain profile. 57 162 IPR003340 GO:0003677
Cme09g01901 397 CDD B3_DNA 55 144 IPR003340 GO:0003677
Cme09g01901 397 MobiDBLite consensus disorder prediction 216 235 - -
Cme09g01901 397 MobiDBLite consensus disorder prediction 29 49 - -
Cme09g01901 397 Gene3D - 50 170 IPR015300 -
Cme09g01901 397 SUPERFAMILY DNA-binding pseudobarrel domain 54 163 IPR015300 -
Cme09g01901 397 Pfam B3 DNA binding domain 57 161 IPR003340 GO:0003677
Cme09g01901 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 376 IPR044800 GO:0003700
Cme09g01901 397 MobiDBLite consensus disorder prediction 323 342 - -
Cme09g01901 397 SMART B3_2 57 162 IPR003340 GO:0003677
Cme09g01901 397 MobiDBLite consensus disorder prediction 360 397 - -
Cme09g01901 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 38 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00470 Cme-Chr2:4367391 Cme09g01901 Cme-Chr9:23146679 9.34E-27 transposed
Cme02g01073 Cme-Chr2:15752452 Cme09g01901 Cme-Chr9:23146679 1.11E-26 transposed
Cme03g00482 Cme-Chr3:7028836 Cme09g01901 Cme-Chr9:23146679 1.13E-07 transposed
Cme04g02788 Cme-Chr4:32977994 Cme09g01901 Cme-Chr9:23146679 1.25E-12 transposed
Cme08g00326 Cme-Chr8:2073996 Cme09g01901 Cme-Chr9:23146679 1.36E-13 transposed
Cme09g00779 Cme-Chr9:9587760 Cme09g01901 Cme-Chr9:23146679 1.99E-40 transposed
Cme10g00289 Cme-Chr10:1878784 Cme09g01901 Cme-Chr9:23146679 1.23E-47 transposed
Cme11g02307 Cme-Chr11:30130044 Cme09g01901 Cme-Chr9:23146679 5.51E-64 transposed
Cme07g01632 Cme-Chr7:22077795 Cme09g01901 Cme-Chr9:23146679 4.86E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41997 PF02362 B3 8.00E-29 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01901 - - csv:101211271 683.33