Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01908 ATGGGGTACAAGAGAAATGCGAAGAAATGTAAAGAGAAATTCGAGAATGTTCAGAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGGAAGACTTACAAATTCTTTACGCAACTTGAGGCTCTTCACAACGCAAACGTGGCGCCTTCTTCTTCTAATTCATCCTTCACACTGCCACAGCCGCTTCCTGCAGCAGCAACAACCACAACCCCCGTTGGCTTTGGGATTAGCAACCCAACTCCAATCTCATCCGTCAAAATTTCATCATCTTCTTCACAAACCCCAATGGGAATCTTTTCTACACCATCAGATCATTTCACTGTCCGACCACCACCCGCCGTCGCTGCTCCTATGGGTGTTAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAAGATGATGATGATGATGATGAAGATGAGGAGATGGGGTTTGATGTTGACCTTGAAGGGGAGCCGGAGAATGTAGCCGGAAGTAGTAGGAAACGGCGGAGAGGGGTGGTTAAAGGGAATAATGATGAATGGAGAAGTAGTAGTAGTAGTAGTGATCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAACAAGTGATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAGAAAAGGGAACAAGATAGGATGGTTAGAGAAGAGAATTGGAAAAAAGAAGAGATGTTTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCAGCAACAGCCCCACAAGTGCCTGTGCCTGTACCTATGGCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCGCCACTATCTCCTGTCTCCTCTCATCAGCCAATGCAACCACAAACTCTGCCACACCTTCAGATTCAGCCGCCTACAAATACAATCCCATTGGAACAACCAAAACCAAAACTTCAGGAAATTATTCAAGGGGGAGATGGATCTTCAGAACCCATTTCATCAAGATGGCCAAAGCAAGAAGTTTTAGCTCTAATAAAGCTGAGAGGTGGGCTTGAATCAAAGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGATAAAGATGGGTTACAAGAGAAGTGCTAAAAGATGCAAAGAGAAATGGGAAAATATCAATAAGTACTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGCGAGGATTCTAAAACTTGCCCTTATTTCAATGAACTTGATGCTCTTTATCGCAAAAAAATCCTTTCTACTGCTGCTGCTACTGCTACTGCTTCCGATCATTCTGGTTCTTTTGAACAAAACCCAATTCAAAATATGGAAATTATTCCTCCATCAACAACGACTACAACAACAGATCATCATCTTCAATCCCAACCTCATTCTTCTTCCATTCCTCAAGGTCTATCCGCTACTCTTTTTGGTGAAGGAACTGAAGAACAACAACAACAACCAACATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGAGGACGACATCTATCGACGTCATCTCAATCAAGACGACGGCAATGACGAAAACAACGACGATTATTGCAGTGATGACGATGAAGACGACGAAGACGATTTACCAGAAGAAAAAAGAAACAGTAACATCGATTATAAAATAGAGTTTCAAAGACGAAACAATGTAGGAAACTCCAATGGTGTTGCAAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 1815 42.53 MGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSNSSFTLPQPLPAAATTTTPVGFGISNPTPISSVKISSSSSQTPMGIFSTPSDHFTVRPPPAVAAPMGVSFSSNTSSASTEDDDDDDEDEEMGFDVDLEGEPENVAGSSRKRRRGVVKGNNDEWRSSSSSSDHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKKEEMFRLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPATAPQVPVPVPMAVSVPMPMPVPAPLSPVSSHQPMQPQTLPHLQIQPPTNTIPLEQPKPKLQEIIQGGDGSSEPISSRWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSTAAATATASDHSGSFEQNPIQNMEIIPPSTTTTTTDHHLQSQPHSSSIPQGLSATLFGEGTEEQQQQPTSTKPEDIVNELMELQEDDIYRRHLNQDDGNDENNDDYCSDDDEDDEDDLPEEKRNSNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23225738 23228220 - MELO3C005815.2.1 Cme09g01908 338768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01908 604 ProSiteProfiles Myb-like domain profile. 348 412 IPR001005 -
Cme09g01908 604 MobiDBLite consensus disorder prediction 540 604 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 548 567 - -
Cme09g01908 604 PANTHER GT-2-LIKE 1 2 573 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 115 185 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 473 501 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 159 175 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 579 604 - -
Cme09g01908 604 MobiDBLite consensus disorder prediction 134 153 - -
Cme09g01908 604 Gene3D - 356 417 - -
Cme09g01908 604 Pfam Myb/SANT-like DNA-binding domain 354 441 IPR044822 -
Cme09g01908 604 Pfam Myb/SANT-like DNA-binding domain 2 46 IPR044822 -
Cme09g01908 604 CDD GT1 354 419 - -
Cme09g01908 604 PANTHER - 2 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01908 - - - csv:101212243 966.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01432 Cme-Chr2:20798333 Cme09g01908 Cme-Chr9:23225738 1.55E-07 dispersed
Cme02g02041 Cme-Chr2:26459780 Cme09g01908 Cme-Chr9:23225738 1.00E-11 dispersed
Cme03g00609 Cme-Chr3:9795534 Cme09g01908 Cme-Chr9:23225738 2.47E-21 dispersed
Cme09g01908 Cme-Chr9:23225738 Cme11g00078 Cme-Chr11:629359 9.20E-10 dispersed
Cme11g02367 Cme-Chr11:30650125 Cme09g01908 Cme-Chr9:23225738 1.73E-09 dispersed
Cme09g01908 Cme-Chr9:23225738 Cme09g01909 Cme-Chr9:23228374 7.58E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41998 PF13837 Myb_DNA-bind_4 3.80E-22 CL0123 Cme TF