Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01910 ATGGGTTTGCTCCGGTTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCATTCTCGATGCTCAAATTCAACACAGTTTCTTTGCTACTAGGTTTCGTTGGACCGATATCGAGACTTTCACTAAGAATTTCTCCACTCTTGTCGGCTCCGGCGGCTTCAGCACCGTTTATCTTGCTCGGACGGCGCCGGGGATGGCCGCTGCCGTTAAGATTTTAGGTGCTAGCGAGCGGCTTAACCGGATGTTCCGACAAGAATTGGACATTCTTCTCCAACTCCGTCATCGTAATATTGTCAATTTCGTTGGTTATTGTGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTTCCAAATGGCAACTTACAAGAGAAGCTCCACCGACGGCCAGCGTCGACCGTTCTTCCATGGAAAATCCGTCTAGTTATAGCTTTTCAGTTAGCACAAGCTATTGAATACCTTCATGAGAAATGCAGTTTACAAATCGTTCACGGCGATATAAAATCATCAAACATTTTACTAGACGAGCAATTCAATTGCAAACTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCCGCGGTGGGGAATCCATCATCATCATCGTCGTCGTCGCCGTCGAGCCCATTCAGAGCAAAGCAATTGATGATGGGATCTCCAGGATATACAGATCCCCAATACTTAAGAACCGGAATCGCCTCAAAGAAAAACGATGTTTACAGTTTCGGCGTTGTTCTTTTAGAGCTAGTCACCGGAAAAGAAGCGTTCTGTTCGGAGAAGGGTCAAATTCTGACATCAATTTTACCTCCGACAGTTCGCGACGGCGGAGGAATTAAACCGTCAGAGGTGGCGGAATTAGTTGATCCGAAACTCCGGGGAGATTTCAACGGGGATGAAGCTGGGGCGTTGATAACAATAGCGGCAGCGTGCGTGAGACAGCCGCCAGCACCGAGGCCGACGATCGGAGGGGTGGTGGAGATGATAAGGGAAAAGATGGGGAATGTGGGGGAGGTGAAACGTGGGAGTAAGTTATTGGATGTGGGGAGATGGTAA 1065 47.14 MGLLRFFRVKRKSKVADKKTILDAQIQHSFFATRFRWTDIETFTKNFSTLVGSGGFSTVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHRRPASTVLPWKIRLVIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDEQFNCKLCDFGSAKMGFSSAVGNPSSSSSSSPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDVYSFGVVLLELVTGKEAFCSEKGQILTSILPPTVRDGGGIKPSEVAELVDPKLRGDFNGDEAGALITIAAACVRQPPAPRPTIGGVVEMIREKMGNVGEVKRGSKLLDVGRW 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23244048 23246095 + MELO3C005816.2.1 Cme09g01910 338770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01910 354 CDD STKc_IRAK 51 332 - -
Cme09g01910 354 MobiDBLite consensus disorder prediction 199 216 - -
Cme09g01910 354 Gene3D Phosphorylase Kinase; domain 1 8 119 - -
Cme09g01910 354 PANTHER BNAA02G22020D PROTEIN 19 342 - -
Cme09g01910 354 SUPERFAMILY Protein kinase-like (PK-like) 28 332 IPR011009 -
Cme09g01910 354 MobiDBLite consensus disorder prediction 199 219 - -
Cme09g01910 354 Gene3D Transferase(Phosphotransferase) domain 1 120 345 - -
Cme09g01910 354 SMART serkin_6 45 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01910 354 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 19 342 - -
Cme09g01910 354 ProSiteProfiles Protein kinase domain profile. 45 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01910 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Cme09g01910 354 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Cme09g01910 354 Pfam Protein kinase domain 49 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01910 Cme-Chr9:23244048 Cme04g01161 Cme-Chr4:15889458 6.87E-57 dispersed
Cme09g01910 Cme-Chr9:23244048 Cme01g02871 Cme-Chr1:35505688 2.17E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65178 PF00069 Pkinase 3.70E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01910 - - csv:101212406 621.698