Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01920 ATGTGGTTTGTTAACAGGAAGGGGCCATCTGGGTTCTCAGCTTCTTCCACGGCTGAAGAAGTTACACAAGGAATCAATGGAAATGGCCTCACAGCCATTGTTACAGGTGCTTCAAGTGGCATTGGCACTGAAACTGCTCGTGTTCTTGCACTGCGCGGAGTACATGTAATAATGGCGGTTAGAAATGTAGCAACTGGTAGGGAGGTTCAAAAAGTCATTGTCAAGGAAAACCCAACTGCCAAAGTTGACACCATGGAGTTGGACCTGAGCTCAATGGCATCTGTTCGGAATTTTACATCAAATTTCAAGTCCTCAGGTCTTCCACTGAATATTCTTGTTAATAATGCAGGAGTCATGGCTTCACCCTTCTTGCTCTCGAAGGACAAGATAGAATTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTATTGTTGGAGACATTGAAAAAGACAGCAAAAGATAGTGAAAGAGAAGGAAGGATTGTCAATGTCTCGTCACGACGGCACCAATTTTCGTATCGTGAAGGCATCCGATTTGACAAAATCAACGATCAATCAGGCTATAATGGTCTATCTGCGTATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGACAGCTGAAGGAAGAAGGGGTGAAGATCACTGCAAATTCACTACATCCTGGAGCCATTCCTACTAACCTATTTCGTTATCATAGCCTCATCGACGGTTTTCTTGGCGTTCTGGGTAAACATGTCATGAAGAATGTACAACAGGGAGCAGCGACGACATGCTATGTTGCATTGCATCCACAAGTCAATGGGATCAGTGCCCAGTATTTTGCTGACAGTAACATTGCCAAAGCAAGTTCACAAGCCAATGATAGTGAATTGGCAAAGAGACTGTGGGATTTCACCCAGAAGTTGGTATCTAGTGCTTTACAAATTCCTTAA 960 43.12 MWFVNRKGPSGFSASSTAEEVTQGINGNGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNVATGREVQKVIVKENPTAKVDTMELDLSSMASVRNFTSNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTAKDSEREGRIVNVSSRRHQFSYREGIRFDKINDQSGYNGLSAYGQSKLANILHASELARQLKEEGVKITANSLHPGAIPTNLFRYHSLIDGFLGVLGKHVMKNVQQGAATTCYVALHPQVNGISAQYFADSNIAKASSQANDSELAKRLWDFTQKLVSSALQIP 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23301248 23305093 - MELO3C005826.2.1 Cme09g01920 338780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01920 319 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Cme09g01920 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cme09g01920 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cme09g01920 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Cme09g01920 319 Pfam short chain dehydrogenase 31 173 IPR002347 -
Cme09g01920 319 Gene3D - 25 317 - -
Cme09g01920 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 288 IPR036291 -
Cme09g01920 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Cme09g01920 319 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cme09g01920 319 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cme09g01920 319 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cme09g01920 319 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Cme09g01920 319 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cme09g01920 319 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01920 - - - csv:101213775 586.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01630 Cme09g01920 CCT
Cme07g01630 Cme09g01920 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01920 Cme-Chr9:23301248 Cme12g02032 Cme-Chr12:25826989 3.95E-28 dispersed
Cme09g01920 Cme-Chr9:23301248 Cme09g01921 Cme-Chr9:23305578 1.95E-167 tandem
Cme01g00777 Cme-Chr1:8003590 Cme09g01920 Cme-Chr9:23301248 4.15E-22 transposed
Cme02g01995 Cme-Chr2:26200919 Cme09g01920 Cme-Chr9:23301248 6.38E-92 transposed
Cme02g02120 Cme-Chr2:26926193 Cme09g01920 Cme-Chr9:23301248 1.30E-14 transposed
Cme04g02606 Cme-Chr4:31994148 Cme09g01920 Cme-Chr9:23301248 7.13E-110 transposed
Cme06g02400 Cme-Chr6:31149531 Cme09g01920 Cme-Chr9:23301248 1.05E-73 transposed
Cme07g00398 Cme-Chr7:2607154 Cme09g01920 Cme-Chr9:23301248 1.20E-31 transposed
Cme11g01162 Cme-Chr11:17640838 Cme09g01920 Cme-Chr9:23301248 3.05E-32 transposed
Cme07g01630 Cme-Chr7:22054195 Cme09g01920 Cme-Chr9:23301248 3.42E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126