Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01921 ATGTGGTTATTCAGAAGAAAAGGGCCATCTGGATTTTCGTCTTCTTCCACTGCCGAGGAAGTTACTGATGGAATCGATGGCACTGGTCTTACCGCCATTGTTACAGGAGCATCAAGCGGTATTGGCTCTGAAACTGCGCGTGTTCTCGCATTACGTGGAGTCCATGTCATTATGGGCGTTAGGAATTTAGAAGCTGGTAGAAATGTCAGAGAAACCATCGTGAAGGAGAATCCCTCTGCAAAAATTGATGCCATGGAGTTGGATCTTAGCTCCATGGCGTCTGTAAGAAAATTTGCCTCAGATTACCAGTCGTCTGGGTTTCCACTTAACATCCTCGTTAACAATGCAGGAATAATGGCAACCCCTTTTGGACTTTCAAAAGATAATATAGAGCTGCAATTTGCGACAAACCACGTAGGCCATTTCCTTTTGACAAATCTACTTTTGGAAAATATGAAGAAAACTGCCGCTGAAAGTAAGAAAGAAGGAAGAATTGTAAATGTCTCCTCCGAAGCTCATCGTTACACATATCCTGAAGGCATCCGATTCGATGGAATTAATGATGAATCAAGGTATAACAAAATGCAGGCTTATGGCCAGTCAAAGTTATCTAATATTCTGCATGCCAATGAACTTACCAGACGTTTCAAGGAAGAAGGATTAAACTTAACCGCAAACTCACTCCACCCGGGGATAATCACCACAAATCTTTTCCGCCACTTCAATTATGGCAATGGTATAGTAAACACCGTTGGCAAAATCATGTTTAAAAGTGTTCAACAGGGTGCAGCAACGACCTGCTATGTGGCATTGCATCCACAAGTAAAGGGAGTGAGTGGTGAATATTTTATGAATAGTAACCTACACAAGGCAACCCAACATGGCCAGGATATGGACTTGGCTAAGAAACTTTGGGAGTTTACCACCAATTTACTCAAATAA 942 42.04 MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVRETIVKENPSAKIDAMELDLSSMASVRKFASDYQSSGFPLNILVNNAGIMATPFGLSKDNIELQFATNHVGHFLLTNLLLENMKKTAAESKKEGRIVNVSSEAHRYTYPEGIRFDGINDESRYNKMQAYGQSKLSNILHANELTRRFKEEGLNLTANSLHPGIITTNLFRHFNYGNGIVNTVGKIMFKSVQQGAATTCYVALHPQVKGVSGEYFMNSNLHKATQHGQDMDLAKKLWEFTTNLLK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23305578 23311057 - MELO3C005827.2.1 Cme09g01921 338781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01921 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Cme09g01921 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cme09g01921 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cme09g01921 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cme09g01921 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cme09g01921 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Cme09g01921 313 Gene3D - 22 313 - -
Cme09g01921 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 313 - -
Cme09g01921 313 MobiDBLite consensus disorder prediction 1 21 - -
Cme09g01921 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Cme09g01921 313 Pfam short chain dehydrogenase 31 180 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01921 - - - csv:101214020 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02606 Cme-Chr4:31994148 Cme09g01921 Cme-Chr9:23305578 9.97E-120 dispersed
Cme07g01630 Cme-Chr7:22054195 Cme09g01921 Cme-Chr9:23305578 7.95E-133 dispersed
Cme09g01842 Cme-Chr9:22667298 Cme09g01921 Cme-Chr9:23305578 5.14E-51 dispersed
Cme09g01921 Cme-Chr9:23305578 Cme11g01162 Cme-Chr11:17640838 2.15E-32 dispersed
Cme09g01920 Cme-Chr9:23301248 Cme09g01921 Cme-Chr9:23305578 1.95E-167 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g726 . . . . . . . . . . . . Car02g00817 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01374 . . . . . . . . . . . . . . . . . Cpe13g00109 . . . . . . . . . . . . . . Lsi09g00092 . . Cme09g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126