Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01938 ATGGCTGCCGGAAACGACGATTGGGATCTTTCCGCCGTCGTCCGGAGTTGCAATTCAGCAGCTTCCGCTACAGACCCAACTTCCGCCGCCGCGGAATCCGCCTTGTCTTGTCTCGCTTCTTTAACATTCGACGACGATCCAGACGACGTTGCATTCTCCTTTTCCGACATCTTTCAACCCAAACAACCAAACGGCGGCTTCCATGAATTACACCAAGCCTTCGTCTCTTTTCTCCCTAACCCCTCCGCCACCGACACCACCACCACCACCACCACCACCGTCACCGCCGTACCCGTCTCCGAGCCCGAGATCCCTTACCCAACCCCCCCGAATCGCCATTTCCGTCAGGGAATCAAACCCATTCGCCCAAACCCACCTCCTGTGGCGCTGCAGCAGCACCCCCACCACCGGCAACCGCCGTTTTCGCCGGACCTCCCTAATTCGCCAATGACGCAATCTCTCATACCTAAATCGAGAAAAAGGCAAAACCAACAAAAGAGAAGGGTATGCCATGTTACGGCAGATAACCTCTCAACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCGTATCCAAGGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGAGCAAGAAAGCAAGTTGAACGCAGCAACGTCGATCCCGAAACTTTCATCATCACATACACCGGCGACCACTCTCATCCCCGTCCAACTCACCGTAATTCCCTCGCCGGAAGTTCCCGCAACAGGTCCTCCTCCTCCTCCTCCCGACACCCCACCCCGGGAGATTTCGATCCCTCGATGACCGCCTCCGCTCTCGTACCCTCTTCCTCTTCCCCTGCAGCTTCTCCCATCACACCGCTGAACGATTACGAGGGTCCAACCGGAGAGAAAGATGGAGAGATGTTTGAAGACATGCCGATTGATAGTGACGAGGAAGAGGACGATGAGGATATTCTGATTCCGAACTTGACGGTGAGAGATGAAATCTTTGTTGGGTTTGAGGAGGTTGGGAGGGGGAGGGGGAGGTCATCGTAA 1044 54.79 MAAGNDDWDLSAVVRSCNSAASATDPTSAAAESALSCLASLTFDDDPDDVAFSFSDIFQPKQPNGGFHELHQAFVSFLPNPSATDTTTTTTTTVTAVPVSEPEIPYPTPPNRHFRQGIKPIRPNPPPVALQQHPHHRQPPFSPDLPNSPMTQSLIPKSRKRQNQQKRRVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNVDPETFIITYTGDHSHPRPTHRNSLAGSSRNRSSSSSSRHPTPGDFDPSMTASALVPSSSSPAASPITPLNDYEGPTGEKDGEMFEDMPIDSDEEEDDEDILIPNLTVRDEIFVGFEEVGRGRGRSS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23415488 23416900 + MELO3C005843.2.1 Cme09g01938 338798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01938 347 MobiDBLite consensus disorder prediction 123 169 - -
Cme09g01938 347 ProSiteProfiles WRKY domain profile. 173 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g01938 347 SMART WRKY_cls 178 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g01938 347 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 339 IPR044810 GO:0003700
Cme09g01938 347 MobiDBLite consensus disorder prediction 229 319 - -
Cme09g01938 347 MobiDBLite consensus disorder prediction 123 146 - -
Cme09g01938 347 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 339 - -
Cme09g01938 347 MobiDBLite consensus disorder prediction 241 264 - -
Cme09g01938 347 SUPERFAMILY WRKY DNA-binding domain 173 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g01938 347 MobiDBLite consensus disorder prediction 272 287 - -
Cme09g01938 347 Gene3D WRKY domain 162 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g01938 347 Pfam WRKY DNA -binding domain 180 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01938 Cme-Chr9:23415488 Cme12g01018 Cme-Chr12:17787998 1.87E-30 dispersed
Cme06g00151 Cme-Chr6:903897 Cme09g01938 Cme-Chr9:23415488 7.56E-52 wgd
Cme07g01614 Cme-Chr7:21928416 Cme09g01938 Cme-Chr9:23415488 3.59E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42002 PF03106 WRKY 4.20E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01938 K13425 - cmo:103482922 579.711