Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01945 ATGGAACAGAAGCACATTTTTCTATCTGCTTTGGGTGTTGGTGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAAATTACAGGACAAAAGATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGCAAAAACAGCAATGTAACTTTTGCTGAGTTTCCTTATTATCTAAGCGAAAGGACTCGAGTCCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATCTCCAAGCACACCAGGAATCTTTCGCCAGCAAGTCGGGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCACTGGCGCATCACTTTGAGTCAAAGTTGCTGTTGTTAGACGTCTCTGACTTTTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTTATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCAATTCTTCCTACAAGTGGAAATACTAGGGGAAACCTCAGAAGGCAAAGCAGTACCACCGACATTCAATCGAGATGCACGGATAGCTCGTCTAATCTTCCAAAGCTTCGGAGAAATGCTTCTGCTGCTTCTGATATTAGTAGTATCTCATCAAACTATGGTTCAACAAACTCAGCTTCCGCCAAGCGCACAAATACTTGGTGCTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCCTGGTGTCGGTATCAGAAACTAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTAAGTCACAGAGGATGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCAGGATCAGTTTTAGTTCTTGGTTCTCGAATGGTAGATGTGGAAAATGATTGTGGCGATGTTGACGACAGACTGACCAATTTATTCCGGTATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTGAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATCGCCGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATTTGCCATGCAGACACTATGGTTCTCAGTAATTATATTGAAGAAATTGTTGTGTCGGCGATATCGTATCATTTGATGAACAACCGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAGGGCAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCAAAGGAAGCCCAAAGGGACGAAGCCGTTGGGGTAAAGACTGAATCTAAATCTGAAAATCCAGCTGCAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAAGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCCGACAACGAATTTGAAAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTCACATTTGCAGACATTGGTGCTATGGATGAAATCAAAGAGTCCTTACAGGAGTTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAGGGTGGACTTCTTAAACCTTGTAGAGGCATCCTGCTTTTCGGCCCTCCTGGAACGGGTAAAACAATGTTGGCAAAGGCCATTGCTAACGAAGCTGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGAGAAGATGAAAAGAATGTCCGTGCATTGTTTACGCTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTCGATGAAGTCGATAGCATGCTCGGCCAAAGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGTCACATTGGGATGGACTCCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCGACCAACAGGCCATTTGACCTTGACGAAGCAATCATTCGGCGATTTGAACGTCGAATTATGGTTGGTCTTCCTTCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTGTGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAAGATTTGGTAACTTCATTAAAGCTTTTCCTTTGTCTCATTATTACTTGTATAAGATGA 2307 42.48 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLLDGKNSNVTFAEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESLFRRSISEVTLERMSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRCTDSSSNLPKLRRNASAASDISSISSNYGSTNSASAKRTNTWCFDEKLFLQSLYKVLVSVSETSSIILYLRDVERLLLKSQRMYNLFHRFLNKLSGSVLVLGSRMVDVENDCGDVDDRLTNLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNSEGKDTLKLETNAESSKEAQRDEAVGVKTESKSENPAAEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLVTSLKLFLCLIITCIR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23442393 23449145 - MELO3C005849.2.1 Cme09g01945 338805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01945 768 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
Cme09g01945 768 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Cme09g01945 768 SMART AAA_5 554 691 IPR003593 -
Cme09g01945 768 Gene3D - 517 689 IPR027417 -
Cme09g01945 768 MobiDBLite consensus disorder prediction 446 480 - -
Cme09g01945 768 Gene3D - 690 749 - -
Cme09g01945 768 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 754 - -
Cme09g01945 768 MobiDBLite consensus disorder prediction 184 215 - -
Cme09g01945 768 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 754 - -
Cme09g01945 768 CDD AAA 524 689 - -
Cme09g01945 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 760 IPR027417 -
Cme09g01945 768 Pfam AAA+ lid domain 710 751 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01945 - - - csv:101216426 1417.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02411 Cme-Chr1:32409336 Cme09g01945 Cme-Chr9:23442393 6.43E-09 dispersed
Cme09g01945 Cme-Chr9:23442393 Cme09g01996 Cme-Chr9:23758707 3.85E-84 dispersed
Cme11g01923 Cme-Chr11:27313480 Cme09g01945 Cme-Chr9:23442393 6.51E-49 dispersed
Cme11g01924 Cme-Chr11:27318581 Cme09g01945 Cme-Chr9:23442393 1.38E-53 dispersed
Cme12g01595 Cme-Chr12:23233652 Cme09g01945 Cme-Chr9:23442393 4.24E-20 dispersed
Cme03g00137 Cme-Chr3:1804885 Cme09g01945 Cme-Chr9:23442393 2.79E-67 transposed
Cme06g00240 Cme-Chr6:1437222 Cme09g01945 Cme-Chr9:23442393 1.73E-65 transposed
Cme08g00137 Cme-Chr8:1006006 Cme09g01945 Cme-Chr9:23442393 8.49E-63 transposed
Cme07g01607 Cme-Chr7:21860264 Cme09g01945 Cme-Chr9:23442393 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75