Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01955 ATGGAGCAAGACAATGAAGAAGAGGTGAAGACGTTTCAGAGCTTAGGGATATGTGAGCAATTGGTGGAGGCATGTGACAGTTTAGGCTGGAAAAATCCATCAAAGATTCAGGCGGAGGCGATTCCTCATGCCCTAGAAGGAAAGGATTTAATTGGACTTGCACAAACTGGTTCTGGGAAAACTGGAGCTTTTGCTCTGCCCATTTTGCAAGCCCTATTGGAAGCTCCCCAAGCATTTTTTGCCTGTGTGCTCTCTCCCACAAGGGAGCTTGCAATTCAGATAGCTGAGCAGTTTGAAGCTTTAGGTTCTGGCATTGGTATTAAGTGTGCAGTGCTCGTCGGAGGGGTAGACATGGTGCAGCAAGCCATTAACCTGGCAAAACGGCCACATATTGTTGTTGGGACACCTGGACGCCTTGTGGACCATCTAACCAATACAAAGGGGTTTTCCCTGCGCACATTGAAGTATCTAGTCCTTGATGAGGCAGATAGGTTATTGAATGAAGACTTCGAAAAGTCAATAGATGAAATTTTGAATGAAATTCCTCGTGAGAGGAGAACATATCTATTTTCTGCTACTATGACCAAAAAGGTTCGGAAACTTCAAAGAGCATGCTTAAGGAACCCTGTTAAGATTGAAGCAGCAACCAAATATTCCACAGTCGACACATTGAAGCAGCAATATTGTTTTATCCCTGCGAAATATAAGGAGTGTTATCTTGTCTATATCTTGACTGAGATGTCTGGTTCAACCTCAATGGTCTTCACTCGCACTTGTGATGCCACTCGCCTTCTGTCATTGATTCTTCGAAATCTTGGATTAAGAGCTATACCCATAAGTGGTCAGATGACCCAGGCGAAGCGACTGGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAATATTCTCATTTGCACTGATGTGGCTAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTTGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTGGTTAATCAGTATGAGTTAGAGTGGTATATACAGATAGAGAAGCTCATAGGGAAAAAACTACCGCAGTTTTCCGCCCAAGAAGAGGAAGTTTTGATGCTGTTAGAGCGTGTGACAGAGGCAAAGAGAATATCTCTCATGAAAATCAAAGAAACTGGTGGTAAAAAGAGGAGGCGAGGTGGGGATGACGAAGATGACAACGACAATAATGATGTTGAAAAGTATCTGCGCAAGACCGGAAAGGGTGGGAAAATGTCCAAGAATGGTAAAACGTCAAAGAAGATGAAAAGAAAATGA 1350 43.19 MEQDNEEEVKTFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHIVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVTEAKRISLMKIKETGGKKRRRGGDDEDDNDNNDVEKYLRKTGKGGKMSKNGKTSKKMKRK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23520889 23526957 - MELO3C005860.2.1 Cme09g01955 338815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01955 449 Gene3D - 218 390 IPR027417 -
Cme09g01955 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
Cme09g01955 449 MobiDBLite consensus disorder prediction 403 449 - -
Cme09g01955 449 MobiDBLite consensus disorder prediction 432 449 - -
Cme09g01955 449 Pfam DEAD/DEAH box helicase 35 201 IPR011545 GO:0003676|GO:0005524
Cme09g01955 449 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Cme09g01955 449 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Cme09g01955 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 212 IPR014001 -
Cme09g01955 449 SMART ultradead3 29 227 IPR014001 -
Cme09g01955 449 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Cme09g01955 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 365 IPR027417 -
Cme09g01955 449 PANTHER RNA HELICASE 4 424 - -
Cme09g01955 449 CDD SF2_C_DEAD 224 353 - -
Cme09g01955 449 CDD DEADc_DDX47 11 213 IPR044765 GO:0005524
Cme09g01955 449 SMART helicmild6 263 344 IPR001650 -
Cme09g01955 449 PANTHER BNAC02G41920D PROTEIN 4 424 - -
Cme09g01955 449 MobiDBLite consensus disorder prediction 403 431 - -
Cme09g01955 449 Gene3D - 1 215 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01955 K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3 [EC:3.6.4.13] - csv:101219259 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01488 Cme-Chr2:21886107 Cme09g01955 Cme-Chr9:23520889 5.29E-50 dispersed
Cme04g00578 Cme-Chr4:5277901 Cme09g01955 Cme-Chr9:23520889 2.58E-81 dispersed
Cme05g00630 Cme-Chr5:6580078 Cme09g01955 Cme-Chr9:23520889 7.11E-62 dispersed
Cme06g00191 Cme-Chr6:1170357 Cme09g01955 Cme-Chr9:23520889 5.51E-65 dispersed
Cme08g00117 Cme-Chr8:881234 Cme09g01955 Cme-Chr9:23520889 4.67E-53 dispersed
Cme09g01955 Cme-Chr9:23520889 Cme11g01628 Cme-Chr11:24147894 3.81E-120 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40