Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01966 ATGTTGAGGGCGTCATCATCTTTGGGAACATGGAAGCACAATCGGTGGAAAGCTTGCTTGGAACTATTCTCGACTCTATGTGAAGGTTTACACACTGAAAACTCCAATATTATTTCTACCAATACTTATATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCGAACTCTGTTCAATGAAATGCCAGTAAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGGTACTCCAAATTTGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGGGATGCACTGCAACAACGTAAAATTAAATGAGACGACCTTTTCTAGTTTGTTGAGTATTTGTGCACATTCAGGGTGTTCATCTGAGGGAAAACAATTTCATTGTTTGGTTTTGAAATCTGGGTTGCAGATATTTGAGCGTGTTGGAAGTGCATTATTGTACTTGTATGCAAATATCAATGACATTAGTGGAGCCAAGCAAGTCTTTGATGAGTTGCATGATAAGAATGATTTATTATGGGACTTGATGCTTGTAGGGTATGTGAAATGGTATGCAAGAAGTGAGCATAACTGTAAGAGGGGATTGGAATTATTCTGCTCCATGCGGATGAATGGTGGGGTTGAACCTAATGAGTTCACTTTTGATTCTGTTGTAAGAGCTTGTGGGAGAATGAGAGATTTGAGTTGGGGGAAGGTTGTTCATGGGATTTTGACTAAATACGGCTTCCACTTTGATCATTCTGTTTGTAGTGCACTGATTTTATTTTATTGTCAGAATGGTGAAATTGATAAAGCTTTCAAATTATTTGAGTCAGTGAAGAGTGAAGGAGATCCTGTGACATGGAACTCAATGATATCAGGTTGTATTCAAAATCATCAGCATGAAGGGGCGTTGAAACTCTATATAACCATGTGCAGAGCATCAGTTGAACGCTCTAGATCAACATTCTCTGTTCTGTTTCAAGCATGCGCATGCTTAGAATCTATTCAATTGGGTCGAGCACTCCATGTGCATGCAATCAGGGAAGCCTTTGACTCGAATGTTTATGTCGGAACATCTCTCATAGATATGTACGCAAAATGTGGGAGCATCCATGATGCTCAAACTTCGTTTGCCAGTGTTTGTTTCCCTAATGTGGCAGCTTTTACCGCTCTAATTAATGGATATGTGCATCATGGACTTGGGATTGAAGCATTCTCAGTCTTTGACGAGATGTTAAAACAAAAAGTTCCGCCAAATGGAGCTACTCTTTTGGGGATTCTTTCTGCATGTAGTTGTGCTGGTATGGTGAAGGAAGGAATGACAGTTTTCCATTCAATGGAGAAATGTTATGGTGTGATTCCAACCCAAGAACACTATGCGTGTGTGGTGGATCTTCTTGGTCGTTCGGGACGTCTGTATGAAGCTGAAGCATTTATTAGATGCATGCCAATTGAAGCTGATAGAGTTATTTGGGGAGCTCTGCTGAGTGCTTGTTGGTTTTGGATGGATTTGAAATTGGGTGAGAGGGTGGCTAAGAAGGTGCTTAGTTTGGACCCCAAAGAAATATCTGCTTATATTATTCTGTCTAATATATATGCTAAATTAGGGAAGTGGGTAGAGAAGATCAATGTGAGGAGGCAATTGGTGAGCTTAAAAGTGAAAAAGATTCGTGGTTGTAGCTGGATCGATGTAAATAATAAAACTTACGTTTTCTCTGCAGGAGATAGGTCTCATCCTAACTGTAATGCAATTTATTCAACTTTAGAGCATCTATTAGCAAATGTAACTCCATAG 1773 39.54 MLRASSSLGTWKHNRWKACLELFSTLCEGLHTENSNIISTNTYISRHVRNGHLDLARTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASGMHCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALLYLYANINDISGAKQVFDELHDKNDLLWDLMLVGYVKWYARSEHNCKRGLELFCSMRMNGGVEPNEFTFDSVVRACGRMRDLSWGKVVHGILTKYGFHFDHSVCSALILFYCQNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRASVERSRSTFSVLFQACACLESIQLGRALHVHAIREAFDSNVYVGTSLIDMYAKCGSIHDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKQKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTQEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLSACWFWMDLKLGERVAKKVLSLDPKEISAYIILSNIYAKLGKWVEKINVRRQLVSLKVKKIRGCSWIDVNNKTYVFSAGDRSHPNCNAIYSTLEHLLANVTP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23576833 23578965 - MELO3C005870.2.1 Cme09g01966 338826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01966 590 Pfam PPR repeat family 67 114 IPR002885 -
Cme09g01966 590 Pfam PPR repeat family 277 323 IPR002885 -
Cme09g01966 590 Pfam PPR repeat family 376 423 IPR002885 -
Cme09g01966 590 Pfam E motif 496 556 IPR046848 -
Cme09g01966 590 Gene3D Tetratricopeptide repeat domain 233 329 IPR011990 GO:0005515
Cme09g01966 590 Gene3D Tetratricopeptide repeat domain 9 121 IPR011990 GO:0005515
Cme09g01966 590 PANTHER BNACNNG15330D PROTEIN 343 587 - -
Cme09g01966 590 PANTHER - 343 587 - -
Cme09g01966 590 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Cme09g01966 590 TIGRFAM PPR: pentatricopeptide repeat domain 278 309 IPR002885 -
Cme09g01966 590 TIGRFAM PPR: pentatricopeptide repeat domain 247 275 IPR002885 -
Cme09g01966 590 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Cme09g01966 590 TIGRFAM PPR: pentatricopeptide repeat domain 419 448 IPR002885 -
Cme09g01966 590 Pfam PPR repeat 40 66 IPR002885 -
Cme09g01966 590 Pfam PPR repeat 247 275 IPR002885 -
Cme09g01966 590 Gene3D Tetratricopeptide repeat domain 374 581 IPR011990 GO:0005515
Cme09g01966 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Cme09g01966 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cme09g01966 590 Gene3D Tetratricopeptide repeat domain 122 232 IPR011990 GO:0005515
Cme09g01966 590 PANTHER BNACNNG15330D PROTEIN 34 182 - -
Cme09g01966 590 PANTHER BNACNNG15330D PROTEIN 156 388 - -
Cme09g01966 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Cme09g01966 590 PANTHER - 156 388 - -
Cme09g01966 590 PANTHER - 34 182 - -
Cme09g01966 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01966 - - - csv:101215850 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01966 Cme-Chr9:23576833 Cme06g00977 Cme-Chr6:6937746 2.58E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36