Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01971 ATGGAGTGCAACAAAGATGAGGCAGCCAGAGCAAAAGAAATTGCTGAGAGAAAATTTACAGAGAGAAATTATTCTGCTGCAAAGAAGTTTGTTTTGAAGGCTCAAAATTTGTACCCTGGGCTTGATGGTCTCTCTCAAATGATGACGACTCTCGAAGTGTATATCTCTGCAGAGAATAAGATAAATGGAGAAACAGATTGGTATGGGATACTCGGTGTGAACCACTTGGCTGATGATGAGACAATTAGGAAACAATATAGAAAGCTGGCTCTTGTTCTTCATCCTGATAAAAACAAGTCACTTGGTGCGGAGGGTGCATTTAAATTGGTTTCAGAGGCTTGGAGTTTGTTATCTGATAAGGCAAAGCGATTGGCTTATAATCAGAAGAGGGACCTGAAAGGAGGTCGACAGAAAACTCCTACTCACTCTCATAGTACTTCAGCGCCACCAAGTGCAAATGGCTTTCAAAATTTTAAGAATGCTGCTCCAAATGCAAGGAACGTTCAAACTAAGGTCCAGGTAGGGCCTACTACTCCATTTCAGCCTTCTCTTAGAAAGCCAGAGACCTTTTGGACTCTTTGTAATCGATGCAAGACACATTACGAGTACCTTAGAGTCTATCTAAATCACACTCTCCTTTGTCCTAATTGTCATGAAGCTTTTTTAGCTGTAGAGAAGGCTCCACCCCCAAATGTATTCAAGTCACCTAGTTGGTCTTCTCAGCAGCAGCAGCATCAAAATTCTAGACAGCATTCTGTTAGTGGCAATACCTACGGTACTGGAAGAAACGCTAAAAATCCTGATACTGGGCATTCTGTGGGTGTTAATTCAGTTGATAATACAAACTTCCATTGGAGTCCTTCCTCCAGGCCAACCGGTACTGGTAGCAACTTTTCATCAGCTTCCGCTCAAGCTGCAAATTTGGTTCAACAAGCAAGTGAGAAAGTGAAGAGAGATCGTGATGAAACACAGCCTTCGCTTGAAGTGGAGAGGAGTCATTTGACCTCTTCAAAGAAGAAAAGAACTGATGGAATTAACAACTATGGGGTCCATGTGGCAAATCAAATGGCCAGAGGTGATGGATCGGCTGGTGATGGTTTACCTGAAACAAGGAAGAGTTATTCTGATACTCAAAAGTTTCATAGTTTTTATGGTGCATTTAACAATAACAATAGCCAGAGAGAGTTGTCAATCTTTGAAATTCGAAACATGCTAATGGACAAGGCTCGAGCTGAGATACGTAAGAAACTTAAAGAATGGAGGTCAATGGCTGAAAAGGCAACTTTAAATAAACAGTCAAAGAAGCAAAAGAGTGTATTGAATGATGGAACTCCTGATATAAAAATTAATGGTAAATCTTCTGCAAATGGTAAAGGATGGCATGGGAGGAAGCCTGAGTCAGACTCTTTAGCCGGTAAAAATACAGGCAGTGCGAATGATCCTATCACAATTAATGTTCCAGATCCTGATTTTCATAATTTTGACTTGGACCGAGCCGAAAGTTCATTTGGGGATGATCAAGTCTGGGCATGTTATGATGATGATGATGGAATGCCTCGTTTCTATGCTCGAATTCACAAGGTGATTTCCCTAAAACCATTCAGAATGCGTATCAGTTGGCTCAATTCAAGAAGCAACACTGAGATTGGCCCGATGGACTGGATAGGTTCAGGGTTCACAAAAACCTGTGGGGATTTCAGAATTGGAAGACATGAAGTCACAAGATCATTGAACTCTTTCTCGCATAAGGTATGCTGGGTAAAAGGTTTACGAGGTGTGATTCGGATATTTCCTCAGAAGGGCGAAGTTTGGGCTCTTTATAGAAACTGGTCTGTAGATTGGAATAAAGATACTTCAGAAGAAATGGTACACAAGTACGATATGGTAGAAGTGCTTGATGATTTTAATGAAGAACAAGGTGTGTCTGTTGCTCCTCTTGTCAAGGTTATTGGTTTCAGGACAGTGTTCCGTACAAACATGGACCCAAAAGAAGTGAGGAAGATCCCTAAAGAGGAGATGTTTCGCTTCTCCCATCAGGTCCCCAATTACTTACTTACGGGAGAAGAAGCTCAAAATGCTCCAAAGGGTTGTCGGGAATTGGATCCAGCAGCAACACCTTTGGAGCTCCTCCAGATTGATGCAGAATCAAATCAGGCAACGACAAAGGAGACTCAGGTAAAAACTGAAGAAGCAATATCTCGTATTAACGAGGAAAATGTAGTTTATGAGGTGGAAGACACTTTGGAAGCTAGAAGGTAG 2259 41.57 MECNKDEAARAKEIAERKFTERNYSAAKKFVLKAQNLYPGLDGLSQMMTTLEVYISAENKINGETDWYGILGVNHLADDETIRKQYRKLALVLHPDKNKSLGAEGAFKLVSEAWSLLSDKAKRLAYNQKRDLKGGRQKTPTHSHSTSAPPSANGFQNFKNAAPNARNVQTKVQVGPTTPFQPSLRKPETFWTLCNRCKTHYEYLRVYLNHTLLCPNCHEAFLAVEKAPPPNVFKSPSWSSQQQQHQNSRQHSVSGNTYGTGRNAKNPDTGHSVGVNSVDNTNFHWSPSSRPTGTGSNFSSASAQAANLVQQASEKVKRDRDETQPSLEVERSHLTSSKKKRTDGINNYGVHVANQMARGDGSAGDGLPETRKSYSDTQKFHSFYGAFNNNNSQRELSIFEIRNMLMDKARAEIRKKLKEWRSMAEKATLNKQSKKQKSVLNDGTPDIKINGKSSANGKGWHGRKPESDSLAGKNTGSANDPITINVPDPDFHNFDLDRAESSFGDDQVWACYDDDDGMPRFYARIHKVISLKPFRMRISWLNSRSNTEIGPMDWIGSGFTKTCGDFRIGRHEVTRSLNSFSHKVCWVKGLRGVIRIFPQKGEVWALYRNWSVDWNKDTSEEMVHKYDMVEVLDDFNEEQGVSVAPLVKVIGFRTVFRTNMDPKEVRKIPKEEMFRFSHQVPNYLLTGEEAQNAPKGCRELDPAATPLELLQIDAESNQATTKETQVKTEEAISRINEENVVYEVEDTLEARR 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23609620 23616549 - MELO3C005875.2.1 Cme09g01971 338831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01971 752 MobiDBLite consensus disorder prediction 139 159 - -
Cme09g01971 752 Pfam DnaJ domain 66 127 IPR001623 -
Cme09g01971 752 PANTHER HEAT SHOCK PROTEIN-LIKE 1 731 - -
Cme09g01971 752 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
Cme09g01971 752 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cme09g01971 752 Coils Coil 410 430 - -
Cme09g01971 752 MobiDBLite consensus disorder prediction 129 159 - -
Cme09g01971 752 MobiDBLite consensus disorder prediction 313 340 - -
Cme09g01971 752 CDD DnaJ 66 119 IPR001623 -
Cme09g01971 752 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cme09g01971 752 MobiDBLite consensus disorder prediction 427 479 - -
Cme09g01971 752 PANTHER BNAC03G44070D PROTEIN 1 731 - -
Cme09g01971 752 MobiDBLite consensus disorder prediction 232 344 - -
Cme09g01971 752 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cme09g01971 752 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cme09g01971 752 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cme09g01971 752 SMART dnaj_3 65 122 IPR001623 -
Cme09g01971 752 Pfam Domain of unknown function (DUF3444) 483 689 IPR024593 -
Cme09g01971 752 Gene3D DnaJ domain 63 173 IPR036869 -
Cme09g01971 752 MobiDBLite consensus disorder prediction 233 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01971 - - - csv:101216332 1444.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00546 Cme-Chr1:4071899 Cme09g01971 Cme-Chr9:23609620 7.41E-167 dispersed
Cme02g02069 Cme-Chr2:26659464 Cme09g01971 Cme-Chr9:23609620 0 dispersed
Cme07g01940 Cme-Chr7:24598189 Cme09g01971 Cme-Chr9:23609620 0 dispersed
Cme09g01971 Cme-Chr9:23609620 Cme11g01970 Cme-Chr11:27700433 4.74E-34 dispersed
Cme09g01971 Cme-Chr9:23609620 Cme04g00239 Cme-Chr4:1883858 2.42E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g875 . . . . . . . . . . . . Car02g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00624 . . Lac11g0143 Hepe06g0780 . Lcy12g0122 . . . . . . . . . . Cme09g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003895 2 1 3 3 3 1 2 1 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45