Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01973 ATGACTTATTTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGGGTTCAGATAAAACTTCAAGGGGTTTATATTCTGCAGATAACACTTTAAATGCTGGAAAGATTGGGACAAGAACTGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCATACAGGATTAATAGAATTAAGAAATCCTTGAAGTCATCTTCGTTCAATAAATTTATGTCCAAAGGTTTTGGAACTGGTAAAAAGGTGCTTGACCCACAGGGACCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCATGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGACGATAAGAAATGTCTTGGATTGGATAAGAAGATGGAGATTACGGCTAGTGTGTTACGTTCATTCACCGACATATTCTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATTGCCCCTTCTTCTCGGGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTTTCATCATACTTTTTAATTGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAATTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATTAGAATCTATCCTTTATATAAAGAAGTTACAAGAACATCTGTGCTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGTTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGAGAAACTACATGCTGGCAGAAGGCTTGCCGTAAGACTGGTTGTGTTTCTAATTCACTATATTGTGATGGTGATGCCAGTCTAAGAGACAACAGATTTTTAAATGTTTCATGCTCTCTAGTTGAAGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTAAATCTGGTGTCGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTAAGAAACCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCACATACGTGTGGGAAATTTGCTTTGCGGTTTTCATCTCTATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGGTTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGTCTCCGAGAGCGAATCAGGAGGTATGAGCAATATAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCAAAAGACCTTAGAAGGGATATTAAACGCCATCTCTGCTTGTCTTTGCTAATGAGGGTACCCATATTTGAAAAAATGGATGAACAATTGTTGGATGCGATGTGTGACCGTCTCAAGCCAGTACTATATACAGAGGAAAGCTACATCGTTAGGGAAGGAGATCCAGTAGACGAGATGATTTTCATTATGCGAGGCAAGCTATTGTCTGTAACTACGAATGGGGGCAGAACTGGTTTCTTTAATTCTGAACATCTTAAGGCGGGTGATTTCTGTGGTGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCTAACCTGCCAATTTCAACGAGAACTGTTCGAACACTTTCAGAAGTCGAAGCATTTGCTTTGAAGGCTGATGACTTGAAGTTTGTAGCCTCACAGTTCCGAAGACTTCACAGCAAGCAGCTGCGACACACTTTCAGACTTTATTCGCAGCAATGGAGGACATGGGCAGCATGTTTTATACAAGCAGCATGGCGCCGATACCGCAGGAAGAAGCATGAACAGACTCTCTTGGAAGAAGAAAACAGGTTAAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCTAGATTTGCAGCTAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCAATGTTGCTTCAGAAACCAGCAGAACCAGATTTTACCTCTGAAGAGAATAGTTGA 2139 41.14 MTYLQEKIVRFQDWGSDKTSRGLYSADNTLNAGKIGTRTDLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSKGFGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDKKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIIIPNMKGSRSLNTKNLLKFVVFFQYVPRFIRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQKACRKTGCVSNSLYCDGDASLRDNRFLNVSCSLVEDNPPFDFGIFLDALKSGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23623350 23630670 + MELO3C005876.2.1 Cme09g01973 338833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01973 712 SMART cnmp_10 482 613 IPR000595 -
Cme09g01973 712 Gene3D - 96 406 - -
Cme09g01973 712 Gene3D Helix hairpin bin 408 473 - -
Cme09g01973 712 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
Cme09g01973 712 SUPERFAMILY cAMP-binding domain-like 411 604 IPR018490 -
Cme09g01973 712 Pfam Cyclic nucleotide-binding domain 502 593 IPR000595 -
Cme09g01973 712 Gene3D Jelly Rolls 480 600 IPR014710 -
Cme09g01973 712 SUPERFAMILY Voltage-gated potassium channels 85 404 - -
Cme09g01973 712 Coils Coil 634 654 - -
Cme09g01973 712 CDD CAP_ED 482 613 IPR000595 -
Cme09g01973 712 Pfam Ion transport protein 94 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme09g01973 712 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 709 - -
Cme09g01973 712 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00284 Cme-Chr5:2110221 Cme09g01973 Cme-Chr9:23623350 7.05E-78 dispersed
Cme06g00103 Cme-Chr6:646155 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme06g00104 Cme-Chr6:652005 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme06g01076 Cme-Chr6:7972733 Cme09g01973 Cme-Chr9:23623350 2.05E-10 dispersed
Cme06g01077 Cme-Chr6:7976384 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme06g01078 Cme-Chr6:7991880 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme09g01973 Cme-Chr9:23623350 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme04g01939 Cme-Chr4:27061927 Cme09g01973 Cme-Chr9:23623350 0 transposed
Cme05g01491 Cme-Chr5:24333092 Cme09g01973 Cme-Chr9:23623350 0 transposed
Cme09g00231 Cme-Chr9:1767519 Cme09g01973 Cme-Chr9:23623350 7.44E-113 transposed
Cme12g02040 Cme-Chr12:25864194 Cme09g01973 Cme-Chr9:23623350 7.50E-146 transposed
Cme06g01113 Cme-Chr6:8436587 Cme09g01973 Cme-Chr9:23623350 4.71E-17 wgd
Cme06g01075 Cme-Chr6:7946204 Cme09g01973 Cme-Chr9:23623350 2.19E-29 wgd
Cme06g00102 Cme-Chr6:640088 Cme09g01973 Cme-Chr9:23623350 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01973 K05391 - csv:101221781 1379.77