Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01982 ATGGCGATTATCTCCGACTACGAAGAGAAGGAAGAAATCCCAAAGCCAAAGAGGCCTTCATCTTCCTCCTCTCCATCTTCTTCTTCATCAGCTAAGCCTTCTCAATTCAATGCCAACTTTGACCCTTCAAACCCTCTAGGGTTTTTGGAGAAGGTGTTCGATTTTCTTGCCAATGAGACCGATTTTCTCTCCAACGATAGAGTCGAGAAGGACATTGAGACGGTTGTGCGCAGAGCTGTGGAGAAGAGAAAGAAGCATGAGGAGTCACTTGAGCTTAAAGGTAAGGCTGAAAAGAGGATTAAGGAGGAGGTGAAGAGTGTTAAGCAGGAAGCTGCGCCGGCGAAGGCTGTTGCATCGCCGCCGGAAGAGAAAGTGGGTGAGAAGTTGGAGGAAGTTACCGAGGAGAAGAAAGAGGACAACGGGCCAAGAGTCCCCAACAAAGGTAATGGTCTTGATATGGACAACTACTCTTGGACACAGTCTCTCCAAGAAGTCAATGTTAATGTACCTGTACCAAAAGGAACTAAGTCCAGGTTCGTGGTTTGTGAGATCAAGAAGAATCGTCTCAAAGTTGGACTAAAGGGTCAACCGCCAGTGATAGATGGAGAGCTTTGTCATACTGTCAAGCCAGATGACTGTTATTGGAGCATAGAGGATGAGAGCATCATTTCTATTCTTTTGACTAAGCACAACCAAATGGAGTGGTGGAAATATTTAGTTAAAGGGGATCCTGAGATTGATACTCAGAAGGTTGAGCCTGAGAACAGCAAACTATCTGATTTAGATCCAGAAACACGACAAACAGTTGAAAAGATGATGTTCGATCAAAGGCAGAAATCTATGGGACTCCCGACAAGTGATGAGATGCAGAAGCAAGAGATTCTGAAGAAGTTCATGTCTGAGCATCCGGAGATGGACTTTTCAAGGGCAAAGATATCGTAA 942 44.9 MAIISDYEEKEEIPKPKRPSSSSSPSSSSSAKPSQFNANFDPSNPLGFLEKVFDFLANETDFLSNDRVEKDIETVVRRAVEKRKKHEESLELKGKAEKRIKEEVKSVKQEAAPAKAVASPPEEKVGEKLEEVTEEKKEDNGPRVPNKGNGLDMDNYSWTQSLQEVNVNVPVPKGTKSRFVVCEIKKNRLKVGLKGQPPVIDGELCHTVKPDDCYWSIEDESIISILLTKHNQMEWWKYLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQEILKKFMSEHPEMDFSRAKIS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23670692 23674630 - MELO3C005884.2.1 Cme09g01982 338842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01982 313 Pfam CS domain 155 229 IPR007052 -
Cme09g01982 313 ProSiteProfiles CS domain profile. 151 240 IPR007052 -
Cme09g01982 313 CDD p23_NUDC_like 156 240 - -
Cme09g01982 313 SUPERFAMILY HSP20-like chaperones 141 255 IPR008978 -
Cme09g01982 313 MobiDBLite consensus disorder prediction 111 150 - -
Cme09g01982 313 MobiDBLite consensus disorder prediction 121 143 - -
Cme09g01982 313 MobiDBLite consensus disorder prediction 1 43 - -
Cme09g01982 313 MobiDBLite consensus disorder prediction 18 42 - -
Cme09g01982 313 MobiDBLite consensus disorder prediction 1 17 - -
Cme09g01982 313 Gene3D - 147 274 IPR008978 -
Cme09g01982 313 PANTHER NUCLEAR MIGRATION PROTEIN NUDC 25 313 - -
Cme09g01982 313 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 25 313 IPR037898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01982 K25866 NUDC; nuclear migration protein NudC - csv:101222013 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01982 Cme-Chr9:23670692 Cme12g00091 Cme-Chr12:921325 3.59E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38