Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01983 ATGAATAACAATAACAACTACAAGCAGCTCCACACCTCCCACTCTGCCAACACCACTCCGGCCACCTCCTTCCGCCTCTCCGGCAATGATCCCCCTCCGCCCTCCTCCTCCCTCCGTCGTCGCTCTCGTATCCTAATCATCTCTTTCATGTCCGTCCTCCTCATCGCTGCTTCAGTCGTTTCCGCAGCTATCCTTGTTCGATCACGTATCGCGTCGAGCCAACCCCATTTCCCTCACAACAAGCCCTCCCAAGCCATCTCCCGCGCGTGTAGCCACACGCTCTACCCATCTCTTTGCCTCTCCTCTCTTCTATCCTTCCCCGGCGCACAATCGGCCGATGTTCATGACCTTGTTCATATCTCTCTCAACTTAACTCTTCAGCATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCTATCTTACAAATCTCCAAGGACCCTTTGGCCCATTCCGCTTATGAAGATTGTATGGAGCTTTTAAACGACGCCATTGATGCTTTTTCTCTCTCTCTTTTCTCTACGGGAGCTTCCAATCATGACATCATGACGTGGCTTAGTGCTGCATTGACTTACCATGACACGTGTACGGATGGATTTCAGGATGTGACTGACTTGGGTGTTAAGAATGAGGTGGAGGCCAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGAGGTGGGGATTTGCCGGTGGAGAATAGAAAGCGGCGGCGGTTGATGGAGAGTGGTACGCCGTCGTCGTGGGCGGCGGAGAATGGTGGTGATCATGAAGGGTTTCCTGAGTGGTTGAGTGGGAAGGATCGGCGGCTTTTGGCTGCTCCTATATCGGCGATTCAGGCGGATATTGTGGTAGCTAAGGATGGTTCTGGGAAATTCAAGACGGTGGCAGAGGCCATTGAGGCCGCTCCGTCGTCGAGTGGCCGCCGGATCATCATCTACATTAAGGCTGGAAAGTACGAAGAGGAGATTTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTCGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGAAAAAGTGTTTATGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCTGGTTCAGGGACAGGAATAATTCTACGAGACATGTCGTTCGAGAACACGGCAGGACCAAGCAAGCATCAAGCAGTAGCATTACGTCTGAGCGCGGACCACGCGGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTACGTGCACTCCAATCGTCAATTCTTTCGGGAGTGCGACATCTACGGAACAATCGACTTCATCTTCGGCAACGCTGTGGTGGTTTTCCAAAGCTGCAACATCTACGCCCGAAAGCCAATGGCAGGACAAAAAAACACGATAACAGCTCAAGACCGAAAGGACCCGAACCAAAACACAGGAATCTCAATCCACGCTTGCAAGATCGTAGCCACCGGCGACCTCGAAGCGTCCAAGGGCTCTTTCCCCACATTTCTGGGTCGACCTTGGAAGTTATACTCGAGAGTGGTGTACATGGTGTCTTCCATGGGGGACCATATTCATCCACGAGGGTGGCTCGAGTGGCAAGGCTCTTTTGCCCTTGACACTCTTTATTACGGCGAGTATATGAATTCTGGGCCGGGGGCCGCCGTGGGGCAGCGGGTCAAGTGGCCGGGTTACCGGGTCATAACTTCGACGGTGGAAGCCTCCAAGTTTACCGTCGGGCAATTTATTTACGGTTCTTCTTGGTTGCCTTCTACCGGAGTCTCCTTTTCTGCTGGATTATCTACTAACTAA 1818 51.1 MNNNNNYKQLHTSHSANTTPATSFRLSGNDPPPPSSSLRRRSRILIISFMSVLLIAASVVSAAILVRSRIASSQPHFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGAQSADVHDLVHISLNLTLQHLTKALYSTSQIPILQISKDPLAHSAYEDCMELLNDAIDAFSLSLFSTGASNHDIMTWLSAALTYHDTCTDGFQDVTDLGVKNEVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRKRRRLMESGTPSSWAAENGGDHEGFPEWLSGKDRRLLAAPISAIQADIVVAKDGSGKFKTVAEAIEAAPSSSGRRIIIYIKAGKYEEEILKVGRKKTNLMFVGDGKGITVISGGKSVYDKVTTFRTATFAGSGTGIILRDMSFENTAGPSKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTIDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIVATGDLEASKGSFPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSTN 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23683621 23688883 + MELO3C005885.2.1 Cme09g01983 338843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01983 605 PANTHER PECTINESTERASE 37 602 - -
Cme09g01983 605 CDD PMEI-like_3 89 235 - -
Cme09g01983 605 PANTHER PECTINESTERASE 37 602 - -
Cme09g01983 605 Gene3D - 284 602 IPR012334 -
Cme09g01983 605 MobiDBLite consensus disorder prediction 1 38 - -
Cme09g01983 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 231 IPR006501 GO:0004857
Cme09g01983 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 233 IPR035513 -
Cme09g01983 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 84 231 IPR035513 -
Cme09g01983 605 SMART PMEI_2 81 229 IPR006501 GO:0004857
Cme09g01983 605 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Cme09g01983 605 MobiDBLite consensus disorder prediction 1 36 - -
Cme09g01983 605 Pfam Plant invertase/pectin methylesterase inhibitor 85 229 IPR006501 GO:0004857
Cme09g01983 605 Pfam Pectinesterase 290 587 IPR000070 GO:0030599|GO:0042545
Cme09g01983 605 SUPERFAMILY Pectin lyase-like 285 601 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g01137 Cme09g01983 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02238 Cme-Chr1:31058209 Cme09g01983 Cme-Chr9:23683621 3.19E-177 dispersed
Cme01g02759 Cme-Chr1:34704512 Cme09g01983 Cme-Chr9:23683621 1.31E-162 dispersed
Cme09g01544 Cme-Chr9:20495373 Cme09g01983 Cme-Chr9:23683621 4.28E-153 dispersed
Cme06g01137 Cme-Chr6:8755404 Cme09g01983 Cme-Chr9:23683621 1.34E-133 transposed
Cme06g02315 Cme-Chr6:30555564 Cme09g01983 Cme-Chr9:23683621 1.77E-143 transposed
Cme06g01136 Cme-Chr6:8752862 Cme09g01983 Cme-Chr9:23683621 3.46E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01983 - - csv:101216816 1114.75