Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01990 ATGCACTACCGTACTGATTCGGACACAGTGGCTGAATTAGAAGTTCAGTTGGAAGAATTACTCAATGAAGTCAGAATGATGACCATGAGCGGGAGGAAGAATGATGCTGTAGAGCTACTTCAAGCTAATTATGAAGTTGTAAAAGAACAAATGGAATCAGGCGCCGTTGGCATTGAACAAGCTGCTCTTCTTGACATCGTGGCTTTGGGGTATTTAACCGTTGGAGACTTGAAGTTTGTTGCTTCTGTATTGGATATATTGAACAAAGTTGTTGACAGTCTGACGGACGGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACCTTAAAAAAGTTTGAGAAATCAGTATCTGCGTACAAGAGGGCTATTGATATCATGGAGAAAAAATTTGGAGAAGACAGTAGCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTACCATTGGAAGAGCTGGAAAGGCAGTAGAGTGCTACAATCGTGCAATTTCACTTCTGGAATCAAGAAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTGTTTAGTCTGGGCAATCTTATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACATGTTTTGCAAGGATTGTGAACATATATAAAAAGTTATATGGAGAGAAAAATGGAAAAGTCGGAATGGCTATGTATTCTCTGGCTAATGCAAAATATGCAAGAGGGGAAGCAGACGAAGCTGTTACCTTATATAGAAGAGCTTTGGAGATTATTAAGGATTCAAATGATATGGCTGTAGATGACAGCACTACTGAGAAGATGAGGATTGATTTGGCAGAACTATTGCATGTTCTAGGAAGAGGGAATGAAGGCAGAGAACTTCTAGAAGAGTGTTTGTTGATCAATGAAAGGTTGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCCGCTTCTTATTCGCGGTCAAAGAATTATGTGGAGGCTGAGCGTTTGTTGCGAATTGGATTGGACATTATGATAAAGGCAGTCGGATCTGATGATCAATCAATTACAGTCCCAATGTTGGATCTTGCTGTCACTCTTTACAATCTAAAACAGGATGATGAGGCCGAGCAACTTGCTCTTGAAGTCTTGCGAATAAGGGAAAATGCTTTTGGAAAAGATTCACTTCCTGTTGGTGAGGCTCTAGATTGTTTGGTTTCAATTCAGAGCAGGCTAGGGAAGGATGAAAGTGAGCTACTGAAGCTGCTGAAGAGAATTCTTAGAATCCAGGAGAGAGAGTTCGGGGACGATGGTGAAGAGGTCATCGACACCCTCAAGAAAATAGCCTTCTGCATGGAAAAACTGGGAATGAAAGATGAGAAATTTCTACTTCAAAAACGACTATCCATGCTGCGTATGAAATTCAAGAACCAGATGCAATACTAA 1443 41.03 MHYRTDSDTVAELEVQLEELLNEVRMMTMSGRKNDAVELLQANYEVVKEQMESGAVGIEQAALLDIVALGYLTVGDLKFVASVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSVSAYKRAIDIMEKKFGEDSSFLITPILGMAKVLGTIGRAGKAVECYNRAISLLESRRGFENEDLVIPLFSLGNLMLKEGKGKDAETCFARIVNIYKKLYGEKNGKVGMAMYSLANAKYARGEADEAVTLYRRALEIIKDSNDMAVDDSTTEKMRIDLAELLHVLGRGNEGRELLEECLLINERLKGKEHPSSVKHLVNLAASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLDLAVTLYNLKQDDEAEQLALEVLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILRIQEREFGDDGEEVIDTLKKIAFCMEKLGMKDEKFLLQKRLSMLRMKFKNQMQY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23726960 23730975 - MELO3C005892.2.1 Cme09g01990 338850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01990 480 Pfam Tetratricopeptide repeat 359 394 - -
Cme09g01990 480 SUPERFAMILY TPR-like 308 412 IPR011990 GO:0005515
Cme09g01990 480 Coils Coil 3 30 - -
Cme09g01990 480 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Cme09g01990 480 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Cme09g01990 480 Pfam Tetratricopeptide repeat 104 175 - -
Cme09g01990 480 Pfam Tetratricopeptide repeat 191 259 - -
Cme09g01990 480 Pfam Tetratricopeptide repeat 273 343 - -
Cme09g01990 480 Gene3D Tetratricopeptide repeat domain 272 478 IPR011990 GO:0005515
Cme09g01990 480 SUPERFAMILY TPR-like 104 343 IPR011990 GO:0005515
Cme09g01990 480 SMART tpr_5 272 305 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 356 389 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 314 347 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 228 261 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 186 219 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 102 135 IPR019734 GO:0005515
Cme09g01990 480 SMART tpr_5 144 177 IPR019734 GO:0005515
Cme09g01990 480 Gene3D Tetratricopeptide repeat domain 102 271 IPR011990 GO:0005515
Cme09g01990 480 Coils Coil 115 135 - -
Cme09g01990 480 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 18 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01990 - - - csv:101203336 851.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01431 Cme-Chr6:13238663 Cme09g01990 Cme-Chr9:23726960 9.31E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34