Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01999 ATGGCAGAGTATTCGAATCCTACATATAGCTGTAGAAATTGTCGCAATCCCCTCGCTTCCGGAGCCCATCTCCTCTCTAAATCCTTCTTGGCAAAATCAGGGAAAGCATTCCTATTCTCAGAAGCAAAGAACATAGTGGAAGGACCAAAAGAGCAGAAGCAGTTGATAACAGGAATTTTCAAAACTACAGAAATACATTGCAATATATGTGGACAAGTTTTGGGTTGGAAGTATCTCAAAGCTTATGACCTCTCACAGAAATACAAGGAAGGAAAGTTCATCATTGAAACCGCTAAAATTTCCAAGGAATACAATTGA 318 39.31 MAEYSNPTYSCRNCRNPLASGAHLLSKSFLAKSGKAFLFSEAKNIVEGPKEQKQLITGIFKTTEIHCNICGQVLGWKYLKAYDLSQKYKEGKFIIETAKISKEYN 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23776851 23777925 + MELO3C005899.2.1 Cme09g01999 338859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01999 105 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 6 100 IPR039058 -
Cme09g01999 105 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 9 101 IPR004910 -
Cme09g01999 105 ProSiteProfiles Yippee domain profile. 7 104 IPR034751 -
Cme09g01999 105 PANTHER PROTEIN YIPPEE-LIKE 6 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01999 - - - csv:101205754 212.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01999 Cme-Chr9:23776851 Cme10g01063 Cme-Chr10:9145668 8.71E-17 dispersed
Cme09g01999 Cme-Chr9:23776851 Cme09g02000 Cme-Chr9:23778866 2.82E-36 tandem
Cme06g00077 Cme-Chr6:493914 Cme09g01999 Cme-Chr9:23776851 3.57E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00034 Chy09g01450 . . . . . . Bpe12g00342 . . . . Cmo15g01077 . . . . . . Bhi12g00675 . . . Hepe06g0812 . . . . . . . . . . . . Cme09g01999
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015275 0 1 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 1 1 0 0 0 1 1 0 1 12