Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g02007 ATGGTGATAATTAGAGATGAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCCACAAACGATTTCGAAGATGTTGGGCACAGTGATTCAGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACGGTACCTTTGAAGAAGATTTACATTCCATCACAACAAACACAGCACAACCCAGACAAGACACCTGAGTTTGTGATCAAGATCTTGCAGTTTTTGGTTCCCATGTTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATAA 339 40.12 MVIIRDEVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQHNPDKTPEFVIKILQFLVPMLILGLAFAVRHYTKNE 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23822042 23824374 + MELO3C005907.2.1 Cme09g02007 338867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g02007 112 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 2 65 IPR036400 -
Cme09g02007 112 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 14 21 IPR018506 GO:0020037
Cme09g02007 112 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 59 IPR001199 -
Cme09g02007 112 SMART Cyt_b5_2 2 59 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 46 58 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 18 32 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 8 18 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 33 40 IPR001199 -
Cme09g02007 112 Pfam Cytochrome b5-like Heme/Steroid binding domain 2 58 IPR001199 -
Cme09g02007 112 Gene3D - 1 62 IPR036400 -
Cme09g02007 112 PANTHER CYTOCHROME B5-LIKE 2 110 - -
Cme09g02007 112 PANTHER CYTOCHROME B5 2 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g02007 K23490 CYB5; cytochrome b5 - csv:101207109 216.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01532 Cme-Chr4:22065146 Cme09g02007 Cme-Chr9:23822042 8.29E-51 dispersed
Cme05g00704 Cme-Chr5:8215431 Cme09g02007 Cme-Chr9:23822042 7.90E-51 dispersed
Cme06g00386 Cme-Chr6:2431054 Cme09g02007 Cme-Chr9:23822042 1.12E-53 dispersed
Cme09g02007 Cme-Chr9:23822042 Cme11g02257 Cme-Chr11:29702071 1.15E-22 dispersed
Cme06g00068 Cme-Chr6:442555 Cme09g02007 Cme-Chr9:23822042 1.09E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
Cme05g00704 . 1 134 NADPH P450 reductases AT5G53560 67.2 7.8e-50 193.4
Cme06g00386 . 1 143 NADPH P450 reductases AT5G53560 63.6 3.9e-49 191.0
Cme04g01532 . 4 131 NADPH P450 reductases AT5G53560 64.8 6.8e-46 180.3
Cme09g02007 . 2 112 NADPH P450 reductases AT5G53560 74.8 9.8e-45 176.4
Cme05g00704 . 1 134 NADPH P450 reductases AT5G48810 61.8 2.9e-47 184.9
Cme06g00386 . 1 142 NADPH P450 reductases AT5G48810 60.4 2.1e-45 178.7
Cme04g01532 . 2 132 NADPH P450 reductases AT5G48810 61.7 6.0e-45 177.2
Cme06g00386 . 26 143 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cme05g00704 . 13 133 NADPH P450 reductases AT2G32720 73.8 5.6e-48 187.2
Cme04g01532 . 21 132 NADPH P450 reductases AT2G32720 70.5 3.9e-41 164.5
Cme09g02007 . 7 111 NADPH P450 reductases AT2G32720 68.6 6.2e-39 157.1
Cme03g01456 . 1 130 NADPH P450 reductases AT1G26340 52.2 4.5e-37 151.0
Cme08g01481 CCT 2 281 NADPH P450 reductases AT5G17770 82.5 1.2e-132 469.5
Cme04g02153 CCT 2 280 NADPH P450 reductases AT5G17770 77.8 4.8e-126 447.6
Cme05g00031 . 34 287 NADPH P450 reductases AT5G17770 76.0 7.2e-114 407.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156