Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g02007 ATGGTGATAATTAGAGATGAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCCACAAACGATTTCGAAGATGTTGGGCACAGTGATTCAGCAAGAGAAATGATGGACAAATATTACATCGGAGAAATTGATCCTTCAACGGTACCTTTGAAGAAGATTTACATTCCATCACAACAAACACAGCACAACCCAGACAAGACACCTGAGTTTGTGATCAAGATCTTGCAGTTTTTGGTTCCCATGTTGATTTTGGGTTTGGCATTTGCTGTTCGACACTACACCAAGAATGAATAA 339 40.12 MVIIRDEVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQHNPDKTPEFVIKILQFLVPMLILGLAFAVRHYTKNE 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23822042 23824374 + MELO3C005907.2.1 Cme09g02007 338867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g02007 112 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 2 65 IPR036400 -
Cme09g02007 112 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 14 21 IPR018506 GO:0020037
Cme09g02007 112 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 59 IPR001199 -
Cme09g02007 112 SMART Cyt_b5_2 2 59 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 46 58 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 18 32 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 8 18 IPR001199 -
Cme09g02007 112 PRINTS Cytochrome B5 signature 33 40 IPR001199 -
Cme09g02007 112 Pfam Cytochrome b5-like Heme/Steroid binding domain 2 58 IPR001199 -
Cme09g02007 112 Gene3D - 1 62 IPR036400 -
Cme09g02007 112 PANTHER CYTOCHROME B5-LIKE 2 110 - -
Cme09g02007 112 PANTHER CYTOCHROME B5 2 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01532 Cme-Chr4:22065146 Cme09g02007 Cme-Chr9:23822042 8.29E-51 dispersed
Cme05g00704 Cme-Chr5:8215431 Cme09g02007 Cme-Chr9:23822042 7.90E-51 dispersed
Cme06g00386 Cme-Chr6:2431054 Cme09g02007 Cme-Chr9:23822042 1.12E-53 dispersed
Cme09g02007 Cme-Chr9:23822042 Cme11g02257 Cme-Chr11:29702071 1.15E-22 dispersed
Cme06g00068 Cme-Chr6:442555 Cme09g02007 Cme-Chr9:23822042 1.09E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g02007 K23490 - csv:101207109 216.083