Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g02021 ATGGGCGAGGCCGTGGTCGTGAGCTCTGAGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACAACGACGATATGGCAGATGCAGAGAGTATGGGCACTCACAGACCTAACAGAGACGGCAGTTCAAGTGGATTTGGGATTGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTTGAAGCCGATGATTCCACCAGACAGATTATCACAGCCCTCCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAAATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCAGAAGTTGAGTTGCCGTCAATCTCCGGATTTGCTCTCCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATTAGCACTGTTTACAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAACCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGCGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCACTCAACTGGTTATGTTGCTGGAGTTCAGAGGAATGACAAAAACATTGAGAAAGGAAGTGATACTCAGAGCTCTTGTACAAAGGTAGATTTCGAAGCTGGAAATAAGATGCAGGAAAATTCACAGTGTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCCACAAAAAGATGAACGTCACATCAATTTGAGTCAGAGATTGTTTATGCATGAAAATGAAACTGGAGGTAGCTCTTATTTATTTACTCAGTTGCTGAATCTAATTTTTATAAATCTTCGCACTGTACTAGGATTGGCAATGAGTTGCTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTCGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCAGGTGATGATAGGGATCTGCTTGCCAACCCATCCAGAGATGCAACTGCCTCGAATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCAACAATTTTGCTGCAAACAATTTCAGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAGCGTGCTGCAGGACAGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACCTTCAGGCCGTTGCAATCACTTCAAGCAAAATCAAGCAGCATCTGTGATGAGCAAAAGGAAATTGGAAGCAACCCTGAGCATATTGGAAGTATCGGTGCTACTTCTACCTCTGATACCATTAATCCCACGCCAAATCTTCAAAAGAGTAATACTTCTATGCCTATGATCGCGAGTCAATCTACACAGTCAGAAGTTGCTAAATCAAGTACTTCAGAGACGGCAATCCCTCTTCAAGTTTCAGGGACAGATTTGATGTCTAATAATCAACGCTCAGGCTCAGGCCATGGCTCTTTACCTTCTCACAACTTCTACGCACAACGGGGTAGCCCATCATCTCCATGCCGAACTTCAGTCACCCATCCAGAACTCATCTTTGGAAAACAGACGGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCGCAGCGTAAGCAGTCCAGCAAGCAGAAAGATAGAGAATTCTGGGCAGTCTGCGGAAAATCAAGGTCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTCGTGGTAATACGACTCAAGTTGGAAGCCTGGGATATCCTAGCACCTGCGGAAGCAACAGCAGTGTAGATCGAGTTGGTATTGCAAGGGTTACATCTGAGAGTAGAAATGAAGAAGCTTTATTTTCTCAAGGAGGAGATTCTTATCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTGGAGTTTTTACCGCATTGCTACTCTAATCTGGCGCTGCTTTATTTGGTCCGTTACGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCGAGAGTGAAGGGACAGTTTGTCCGGAGAGTATCGACTGATCCATTACCTGCAGAAACCAATGACAATACATCCAACGGTTAG 2202 43.96 MGEAVVVSSEDVDVDVDYVRLHNDDMADAESMGTHRPNRDGSSSGFGIGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNARTDVQEKVEVTSENETASNHSTGYVAGVQRNDKNIEKGSDTQSSCTKVDFEAGNKMQENSQCRQGKASPNDFKPQKDERHINLSQRLFMHENETGGSSYLFTQLLNLIFINLRTVLGLAMSCYVNTDLPITLSMGLEPINDGRSPNIASEAGDDRDLLANPSRDATASNHACIKYPDNYQKSSPSNNFAANNFSSALHLDLSLRRCQPNDFEERAAGQATLKHSSASAFTRYTFRPLQSLQAKSSSICDEQKEIGSNPEHIGSIGATSTSDTINPTPNLQKSNTSMPMIASQSTQSEVAKSSTSETAIPLQVSGTDLMSNNQRSGSGHGSLPSHNFYAQRGSPSSPCRTSVTHPELIFGKQTVYPLNLENHNLEQFLNQHRSVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCRGNTTQVGSLGYPSTCGSNSSVDRVGIARVTSESRNEEALFSQGGDSYRSSQREAALTKFRLKRKDRCYEKKVEFLPHCYSNLALLYLVRYESRKKLAEQRPRVKGQFVRRVSTDPLPAETNDNTSNG 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23891816 23897232 - MELO3C005921.2.1 Cme09g02021 338881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g02021 733 MobiDBLite consensus disorder prediction 568 607 - -
Cme09g02021 733 Pfam CCT motif 694 716 IPR010402 GO:0005515
Cme09g02021 733 MobiDBLite consensus disorder prediction 444 491 - -
Cme09g02021 733 MobiDBLite consensus disorder prediction 506 537 - -
Cme09g02021 733 Gene3D - 59 257 - -
Cme09g02021 733 ProSiteProfiles Response regulatory domain profile. 62 180 IPR001789 GO:0000160
Cme09g02021 733 Pfam Response regulator receiver domain 63 174 IPR001789 GO:0000160
Cme09g02021 733 MobiDBLite consensus disorder prediction 244 265 - -
Cme09g02021 733 MobiDBLite consensus disorder prediction 713 733 - -
Cme09g02021 733 ProSiteProfiles CCT domain profile. 674 716 IPR010402 GO:0005515
Cme09g02021 733 MobiDBLite consensus disorder prediction 449 491 - -
Cme09g02021 733 SMART REC_2 61 176 IPR001789 GO:0000160
Cme09g02021 733 SUPERFAMILY CheY-like 55 191 IPR011006 -
Cme09g02021 733 CDD psREC_PRR 63 166 - -
Cme09g02021 733 PANTHER TWO-COMPONENT RESPONSE REGULATOR 45 692 IPR045279 GO:0009736
Cme09g02021 733 MobiDBLite consensus disorder prediction 191 211 - -
Cme09g02021 733 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 45 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g02021 K12130 PRR5; pseudo-response regulator 5 - csv:101209788 1277.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02346 Cme-Chr8:30431867 Cme09g02021 Cme-Chr9:23891816 4.99E-15 dispersed
Cme09g02021 Cme-Chr9:23891816 Cme12g01975 Cme-Chr12:25560215 2.25E-11 dispersed
Cme09g02021 Cme-Chr9:23891816 Cme02g01081 Cme-Chr2:15840669 1.69E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g911 . . . . Bpe03g00186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g02021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42007 PF00072 Response_reg 7.60E-21 CL0304 Cme TR