Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00004 ATGGAAAACGTGGGGGAAACAAAGCCATCAGCTACAAGTAGTTGCCATACTGATGGTGGAACAGACACTGCTGCCGACCTTCAATTTTCAGTATTATGTCAGCATGGACTACATCTGGACGATAATTGTTGTAATCAAGCATTCAAGTTATTTAGAGAGACGAAACATCTTTTGGTAGCAAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCGGTGAAGAGGCTGAGAGATAAGAATCCAGAGAGTTCACATCAGGGATCTGAGAATAACAGCTTCACTTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTGCCTCAATTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGACCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGGGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGAAGTCAGCTATATCCTGCCCTACTGGTTACTTATCTGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCGGTTCATTTCAGAAACTTCAACATTATTGACTCTGAACGCCTTGTTAAGAAAGGAGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTGATGTCTACGACACGTCAGAGGAAGAACTGAGGGAAGTTATGGAAAAGGCTAATAGCTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAAAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGCCATCTCTTTCAGTCAGTTTGGAAATTCTTGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAACAGCTTGATGAGCGGGTATTTGTTAACGACGAAGACAGTTTACTTGGGTCAGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGCTTGACTCAATGTGCTCTCCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCACATGTCAATGGCACTCTTAATAGTGGTAGCGCAAAAATTGCAGCCACACCAGTTAGCACAGCCATGACAACGGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGTGGAGATGGAGCGCTTTTTGACTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGCAGGGCACACATTATACTAGAGGCTATATTTCCAAATACCGCTCTAGGTGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAGCCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCACAGATGCTGCATGTGACTAATTTGACCTCATTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCTGAATTGGTTTTGGCAACGCATAAAACTGTTACGATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTCGACATGAAGAATCGCTTCCTAGAGAATTAAGGCGACATCTCAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATATATAACTCCCTGATTGTTGCTAAACCTGGCCTTGGTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTCTCTGGTATCGGGGTATCAGCCACACCTAATTTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAATCTAAGCTTCTGCCACCTCCCTTACAGTCGGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCACAAAATTGGCTGCTGTAAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTGTCTCATCAGATTAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAAACGTCAATATTATTTAACCGTCATATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTCGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGATTGGTCTTCAGCACGCCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATCCCTTCTGTAAAACCTTTGCTAGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACGACAGTGATGCACCGTGTCCTGGATCACCTAAGTTATCTCCTTTTCCAAGTCTTCCTGATATGTCACCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATCAACAACCGTTTGAACGGTACACGAAAACTCCGAGGCACGCTAAATTTTGACGATGCGGATGTTGGTTTGGTCAGTGATTCCCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTCTTAAATCTGAACAACCCGAGTCTTAG 3075 42.05 MENVGETKPSATSSCHTDGGTDTAADLQFSVLCQHGLHLDDNCCNQAFKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKNPESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLTLLSKYYKRVYREFFSTNDANVEKKSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVHFRNFNIIDSERLVKKGGKGVDLLGSLCDVYDTSEEELREVMEKANSLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGLMEEPSLSVSLEILEKDYEDAIHNKGEQLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPASHVNGTLNSGSAKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLTSCDRDVTNDVVRRAHIILEAIFPNTALGERCIAGNLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSIYNSLIVAKPGLGAEINRLGLLAEPMPSLDAIAVQINFSGIGVSATPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSILFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNDSDAPCPGSPKLSPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPLKSEQPES 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38388 46399 + MELO3C012492.2.1 Cme10g00004 338890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00004 1024 Gene3D - 423 611 - -
Cme10g00004 1024 Pfam Domain of unknown function (DUF3452) 98 237 IPR024599 -
Cme10g00004 1024 MobiDBLite consensus disorder prediction 886 918 - -
Cme10g00004 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634|GO:0051726
Cme10g00004 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Cme10g00004 1024 PANTHER BNACNNG22930D PROTEIN 6 1010 - -
Cme10g00004 1024 SUPERFAMILY Cyclin-like 743 913 IPR036915 -
Cme10g00004 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634|GO:0051726
Cme10g00004 1024 MobiDBLite consensus disorder prediction 887 901 - -
Cme10g00004 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634|GO:0051726
Cme10g00004 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 6 1010 IPR028309 GO:0006357|GO:0051726
Cme10g00004 1024 SMART DUF3452_2 88 237 IPR024599 -
Cme10g00004 1024 Coils Coil 271 295 - -
Cme10g00004 1024 Gene3D - 706 912 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42008 PF01858 RB_A 1.40E-63 CL0065 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00004 K04681 - csv:101219810 1995.7