Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00006 ATGGATCAACTTACCAAAGACTTCGACAAGGAAATACCCAACATGGATAATTCTAAGAGAGAAGAAGAAGAAGACGACCCAGACGAGGATCAAGAAGATGAACAAGACGACTGGGACGATTGGAATGCAGACGAAGAAGGCGAAGAAGCATTTGATTCGAACTTCCTGTGTCTGTTCTGCAACTCAAAGTACAACGACTGCAATATGCTGTTCAACCATTGCAACTCAGTTCACTATTTCGATTTCCACAGCATCAGAAGGAATCTGGGTTTAGATTTTTATGGTTCTTTCAAAATTATCAACTACGTACGATCTCAGGTTGCAGAAAATAGGTGCTGGAGCTGTGGTCTCTCGTGTCAATCAAACCTGGATTTACAGCACCATTTACACAAAATTTTAAATCTCAATGACATAAAGGCTCTTTGGGACGATGATAAATATCTAAAACCCTTCAAGCAAAATGATCCCCTTCTGTACAGTTTTGCAGAAGACGAAGAGGATGATGATGAAACAGCTAGAGAAAATCTTCCATTTCATGCAAACCAAAACCAAAATAATGGAATGGAAGATTGTAGTTCTGCTTCACATGGTTATTTGAATGCTGCACGCAGGTTAGAGGCCAAGATTGAGAATACTGTGGAAACCACGGAAACCTTGGGTTTGAAATATGACGTGCAGGAAGACAACCAATTAAAAATAGCCAGACAAATTTTTGATAGAAATGACATAAAAAATGCAAATGAAAATTACTTCGGTTCATATGGCTCTTTTGCCATACACAGAGAGATGTTAAGCGACAAGGTTAGAATGGAAGCTTATATGAAGGCTATTTTGGAAAACCCATCTCTCTTCCAGAATGCAGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACTCAAATTGCAGAAGACAATGGCCTCTGGCGGAACAGGAAACAAACTAGAGATTGTGGCATGTCAAGTGGGATTATAGAAGTGATTCATGGTATGGTAGAAGAACTCGATAAGAACATAGAGATTCAGCCTCATAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTATGAGTCAATGCTCAGCTCAGTTCTCTTTGCAAGGGATCGTTGGTTGAAACCTGGAGGTGCAATATTACCAGATACTGCCACTATTCTTGTTGCAGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAACGTGTACGGTTTCAGAATGTCTTGTGTTGGGAAGGAACTTGTAAGGGATGCTGCCAAAGCCCCCATCGTGGACATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATTCTCCATACTTTCGATCTAGCAACTATGCGTCTTGATGAAGTAGACTTCACTGCGATGACCGAGTTGGAACCAAATTTACATAATTCTTCAAACAACTCAAATAGTGTTGAAGCTGAAGCATCTTGGTGTCACGGAGTTGTCTTATGGTTTGAAACTGGTTTCACAAGCAGATTTTGCAAGGAATCACCGGCAGTTCTGTCTTCATCTCCCTACACTCCCAAAACTCACTGGTCTCAAACCATACTAACCTTCAGAGAACCAATTGCTGTAGCATCTAGAAAGTCGGTAACCAATGTATCAGCTCCAGTAGGCAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGGCTTAGCATTGCCCGTGCGCCCGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATTGCTGGTGATGGTAGGAAGCGCCACTGGCCGGTACAACTGTTCACACTAAGATAG 1866 42.18 MDQLTKDFDKEIPNMDNSKREEEEDDPDEDQEDEQDDWDDWNADEEGEEAFDSNFLCLFCNSKYNDCNMLFNHCNSVHYFDFHSIRRNLGLDFYGSFKIINYVRSQVAENRCWSCGLSCQSNLDLQHHLHKILNLNDIKALWDDDKYLKPFKQNDPLLYSFAEDEEDDDETARENLPFHANQNQNNGMEDCSSASHGYLNAARRLEAKIENTVETTETLGLKYDVQEDNQLKIARQIFDRNDIKNANENYFGSYGSFAIHREMLSDKVRMEAYMKAILENPSLFQNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAEDNGLWRNRKQTRDCGMSSGIIEVIHGMVEELDKNIEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVRDAAKAPIVDIVDANDLVTSPAILHTFDLATMRLDEVDFTAMTELEPNLHNSSNNSNSVEAEASWCHGVVLWFETGFTSRFCKESPAVLSSSPYTPKTHWSQTILTFREPIAVASRKSVTNVSAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKRHWPVQLFTLR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48306 59477 - MELO3C012491.2.1 Cme10g00006 338892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00006 621 MobiDBLite consensus disorder prediction 1 40 - -
Cme10g00006 621 SUPERFAMILY beta-beta-alpha zinc fingers 33 172 IPR036236 -
Cme10g00006 621 MobiDBLite consensus disorder prediction 1 20 - -
Cme10g00006 621 MobiDBLite consensus disorder prediction 21 40 - -
Cme10g00006 621 Pfam C2H2 type zinc-finger (2 copies) 57 131 IPR041661 -
Cme10g00006 621 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 247 579 IPR025799 GO:0016274|GO:0018216
Cme10g00006 621 CDD AdoMet_MTases 289 407 - -
Cme10g00006 621 Gene3D - 411 612 - -
Cme10g00006 621 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 253 564 IPR029063 -
Cme10g00006 621 Gene3D Vaccinia Virus protein VP39 237 408 IPR029063 -
Cme10g00006 621 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 25 619 IPR025799 GO:0016274|GO:0018216
Cme10g00006 621 Pfam Methyltransferase domain 289 404 IPR041698 -
Cme10g00006 621 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 25 619 - -
Cme10g00006 621 ProSitePatterns Zinc finger C2H2 type domain signature. 57 78 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01099 Cme-Chr9:15585404 Cme10g00006 Cme-Chr10:48306 8.32E-52 dispersed
Cme09g01617 Cme-Chr9:20939857 Cme10g00006 Cme-Chr10:48306 7.88E-07 dispersed
Cme10g00006 Cme-Chr10:48306 Cme11g02009 Cme-Chr11:27983536 4.45E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00006 K11436 - csv:101215999 1146.34