Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00013 ATGACCGATGTCAGTCCAAGGACTGATATCTCTACTGATGTCGACACCGATGACAAACACCAGAGGCTTGATATGCTTCAACGGAATGCTGTGGCTTCTGATTCCAGTGATCGAACGAAAGATAAGTCTGATCAGAAGACTCTACGCAGGCTTGCACAGAATCGTGAAGCTGCAAGGAAAAGCCGACTGCGAAAAAAAGCTTATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAACAGGAGCTTCAGCGGGCACGGCAGCAGGGAATTTTCATATCAAGCTCAGGAGATCAGGCCCATTCAATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAAATCAATGAACTGAGAGCAGCAGTTAATTCTCATGCCAGTGATACTGAACTTCGAATGATTGTGGATGGCATCTTGGCTCATTATGATGAAGTTTTTCGGCTAAAGGGTGTCGCTGCAAAGGCTGATGTTTTTCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAACTTCTAAAGCTTCTTGTCAATCAATTGGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCCTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCATTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCAAATACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACGGCCATGGGTAAACTTGGGACCCTTGAGGGTTTTATTCGCCAGGCTGACAATCTACGACAACAAACACTACAACAAATGCATCGAATTTTGACAACTCGTCAGTCAGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTGCGAGCCCTTAGCTCTCTCTGGCTTGCTCGCCCAAAAGAGTGA 996 45.98 MTDVSPRTDISTDVDTDDKHQRLDMLQRNAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 143381 157093 - MELO3C012485.2.1 Cme10g00013 338899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00013 331 MobiDBLite consensus disorder prediction 10 25 - -
Cme10g00013 331 Coils Coil 122 142 - -
Cme10g00013 331 Gene3D - 45 97 - -
Cme10g00013 331 MobiDBLite consensus disorder prediction 1 48 - -
Cme10g00013 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 331 - -
Cme10g00013 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Cme10g00013 331 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Cme10g00013 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700|GO:0006355
Cme10g00013 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
Cme10g00013 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Cme10g00013 331 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 331 - -
Cme10g00013 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Cme10g00013 331 MobiDBLite consensus disorder prediction 34 48 - -
Cme10g00013 331 Coils Coil 65 92 - -
Cme10g00013 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00783 Cme-Chr3:14620221 Cme10g00013 Cme-Chr10:143381 1.01E-159 dispersed
Cme03g01483 Cme-Chr3:24038498 Cme10g00013 Cme-Chr10:143381 0 dispersed
Cme04g02110 Cme-Chr4:28463466 Cme10g00013 Cme-Chr10:143381 4.39E-47 dispersed
Cme07g01733 Cme-Chr7:22818008 Cme10g00013 Cme-Chr10:143381 2.34E-104 dispersed
Cme10g00013 Cme-Chr10:143381 Cme12g00629 Cme-Chr12:11347536 2.00E-127 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42009 PF14144 DOG1 4.90E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00013 K14431 - csv:101216885 599.742