Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00026 AAAGAAAAAAGAAAGGGGGTTGGATTGTGTTGGGGAGAGAAAGAGAGATTATGTAAGAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTGTAAGGATTTCTCCATATCTCAAATTCCTCATTCTAATAATAATATCTTCTTCTCACGCAATGCCTTCTTCTTCTTCTTCTTCTTTCTTCCCCATTTCATTTATAAACCCCTTTCTCTCCTTCTTCTCCTTCCCACCAAATTTCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTTTGATATATATTATTATTAATATAATGTCCCTTCTCTCTTCTGATCAGCCTCGATTTCATGTTTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTTTGGGTTTGGTTAGAGAAAGAAATGGAACCAACCATAATTCTCCTATTTCCCCTGAAAATCATCGTCAACATCATCATCAAGAGATTGAAGTTAATCTCATCATCACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGCAAACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGCATATCAAAATCTGAAAGGATAAATCAGAAAGTGTATGTGAATCAGAACATATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTCAACAAGCTTAAGCCTTTTATATGTAGAGGAACAAAAGCCAAGGAAATTGATTTCAACCATCTCAAAAGAAAGGAAATGGAAATCATCTGA 867 36.56 KEKRKGVGLCWGEKERLCKKICGIFLSKLSKFCKDFSISQIPHSNNNIFFSRNAFFFFFFFLPHFIYKPLSLLLLLPTKFPFLLLLLLLLPLPLLIYIIINIMSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTNHNSPISPENHRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKANIPVVIMSSENVPSRINSISKSERINQKVYVNQNICLEEGAEEFLLKPVKLSDVNKLKPFICRGTKAKEIDFNHLKRKEMEII 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 275521 277486 + MELO3C012470.2.1 Cme10g00026 338912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00026 288 PANTHER TWO-COMPONENT RESPONSE REGULATOR 88 288 IPR045279 GO:0009736
Cme10g00026 288 SUPERFAMILY CheY-like 112 258 IPR011006 -
Cme10g00026 288 Pfam Response regulator receiver domain 115 218 IPR001789 GO:0000160
Cme10g00026 288 SMART REC_2 113 263 IPR001789 GO:0000160
Cme10g00026 288 ProSiteProfiles Response regulatory domain profile. 114 267 IPR001789 GO:0000160
Cme10g00026 288 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 88 288 - -
Cme10g00026 288 CDD REC_typeA_ARR 115 262 - -
Cme10g00026 288 Gene3D - 114 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01191 Cme-Chr9:16670479 Cme10g00026 Cme-Chr10:275521 1.55E-61 dispersed
Cme10g00026 Cme-Chr10:275521 Cme10g00486 Cme-Chr10:3124244 1.94E-40 dispersed
Cme10g00026 Cme-Chr10:275521 Cme02g01933 Cme-Chr2:25679801 2.59E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42012 PF00072 Response_reg 6.90E-11 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00026 K14492 - csv:101207245 282.337