Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00034 ATGAGTTTCGATACATTTTTTCCAGAAATGTCACTCAAGTTACACCATATTGATCTAAGGGGTTGTTCAGGTACCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGCATTGGCGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCTGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGATATCATCCTAACAATATACTTACATGTTGGCTACACAGGAAAAAATATGAGCTGCTGCAATTCACAAGTTTAGACGACCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCACTTCCAGTACTGATGTCAACCAAGAAAGGAGGAATTATGAGAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCCGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCTTATTCTGTTAAAACACGAGTTATAAAGAGCAGTTTGAATCCTGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGGGGATCCGAGAATATCGTCGAAAGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGCGAAGCAGAAATCGATATCAATCCACTGCTCACTGCAGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAAAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATTCGACAAGACATCTCGTTGAAGCTGCAGAATGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGCGTTGCTCTTTCTCAGTAG 1182 42.05 MSFDTFFPEMSLKLHHIDLRGCSGTQKRLKDLTAHSGNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSIGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRYHPNNILTCWLHRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSHSTSSTDVNQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVGIREYRRKLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVALSQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 307339 313044 - MELO3C012464.2.1 Cme10g00034 338920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00034 393 MobiDBLite consensus disorder prediction 168 184 - -
Cme10g00034 393 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 16 393 IPR044518 GO:0005096|GO:0005543
Cme10g00034 393 Pfam Putative GTPase activating protein for Arf 27 132 IPR001164 GO:0005096
Cme10g00034 393 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 16 393 - -
Cme10g00034 393 SUPERFAMILY ArfGap/RecO-like zinc finger 26 133 IPR037278 -
Cme10g00034 393 Pfam C2 domain 240 328 IPR000008 -
Cme10g00034 393 Gene3D C2 domain 236 385 IPR035892 -
Cme10g00034 393 CDD C2_ArfGAP 236 380 - -
Cme10g00034 393 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096
Cme10g00034 393 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096
Cme10g00034 393 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096
Cme10g00034 393 ProSiteProfiles C2 domain profile. 209 335 IPR000008 -
Cme10g00034 393 CDD ArfGap 29 132 - -
Cme10g00034 393 Gene3D Arf GTPase activating protein 18 137 IPR038508 -
Cme10g00034 393 SMART C2_3c 238 333 IPR000008 -
Cme10g00034 393 SMART arf_gap_3 26 161 IPR001164 GO:0005096
Cme10g00034 393 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 132 IPR001164 GO:0005096
Cme10g00034 393 MobiDBLite consensus disorder prediction 168 191 - -
Cme10g00034 393 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 236 330 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00118 Cme-Chr4:921832 Cme10g00034 Cme-Chr10:307339 2.78E-20 dispersed
Cme06g02472 Cme-Chr6:31695628 Cme10g00034 Cme-Chr10:307339 2.21E-18 dispersed
Cme09g01152 Cme-Chr9:16169706 Cme10g00034 Cme-Chr10:307339 3.16E-164 dispersed
Cme10g00034 Cme-Chr10:307339 Cme12g01105 Cme-Chr12:18945352 4.80E-100 dispersed
Cme10g00034 Cme-Chr10:307339 Cme02g01681 Cme-Chr2:23935345 4.41E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00034 K12486 - csv:101221541 706.057