Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g00034 | ATGAGTTTCGATACATTTTTTCCAGAAATGTCACTCAAGTTACACCATATTGATCTAAGGGGTTGTTCAGGTACCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGCATTGGCGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCTGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGATATCATCCTAACAATATACTTACATGTTGGCTACACAGGAAAAAATATGAGCTGCTGCAATTCACAAGTTTAGACGACCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCACTTCCAGTACTGATGTCAACCAAGAAAGGAGGAATTATGAGAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCCGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCTTATTCTGTTAAAACACGAGTTATAAAGAGCAGTTTGAATCCTGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGGGGATCCGAGAATATCGTCGAAAGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGCGAAGCAGAAATCGATATCAATCCACTGCTCACTGCAGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAAAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATTCGACAAGACATCTCGTTGAAGCTGCAGAATGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGCGTTGCTCTTTCTCAGTAG | 1182 | 42.05 | MSFDTFFPEMSLKLHHIDLRGCSGTQKRLKDLTAHSGNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSIGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRYHPNNILTCWLHRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSHSTSSTDVNQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVGIREYRRKLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVALSQ | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 307339 | 313044 | - | MELO3C012464.2.1 | Cme10g00034 | 338920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g00034 | 393 | MobiDBLite | consensus disorder prediction | 168 | 184 | - | - | |
Cme10g00034 | 393 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 16 | 393 | IPR044518 | GO:0005096|GO:0005543 | |
Cme10g00034 | 393 | Pfam | Putative GTPase activating protein for Arf | 27 | 132 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 16 | 393 | - | - | |
Cme10g00034 | 393 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 26 | 133 | IPR037278 | - | |
Cme10g00034 | 393 | Pfam | C2 domain | 240 | 328 | IPR000008 | - | |
Cme10g00034 | 393 | Gene3D | C2 domain | 236 | 385 | IPR035892 | - | |
Cme10g00034 | 393 | CDD | C2_ArfGAP | 236 | 380 | - | - | |
Cme10g00034 | 393 | PRINTS | HIV Rev interacting protein signature | 57 | 74 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | PRINTS | HIV Rev interacting protein signature | 38 | 57 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | PRINTS | HIV Rev interacting protein signature | 78 | 99 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | ProSiteProfiles | C2 domain profile. | 209 | 335 | IPR000008 | - | |
Cme10g00034 | 393 | CDD | ArfGap | 29 | 132 | - | - | |
Cme10g00034 | 393 | Gene3D | Arf GTPase activating protein | 18 | 137 | IPR038508 | - | |
Cme10g00034 | 393 | SMART | C2_3c | 238 | 333 | IPR000008 | - | |
Cme10g00034 | 393 | SMART | arf_gap_3 | 26 | 161 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 26 | 132 | IPR001164 | GO:0005096 | |
Cme10g00034 | 393 | MobiDBLite | consensus disorder prediction | 168 | 191 | - | - | |
Cme10g00034 | 393 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 236 | 330 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00118 | Cme-Chr4:921832 | Cme10g00034 | Cme-Chr10:307339 | 2.78E-20 | dispersed | |
Cme06g02472 | Cme-Chr6:31695628 | Cme10g00034 | Cme-Chr10:307339 | 2.21E-18 | dispersed | |
Cme09g01152 | Cme-Chr9:16169706 | Cme10g00034 | Cme-Chr10:307339 | 3.16E-164 | dispersed | |
Cme10g00034 | Cme-Chr10:307339 | Cme12g01105 | Cme-Chr12:18945352 | 4.80E-100 | dispersed | |
Cme10g00034 | Cme-Chr10:307339 | Cme02g01681 | Cme-Chr2:23935345 | 4.41E-32 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g00034 | K12486 | - | csv:101221541 | 706.057 |