Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00035 ATGACATCTGCAAATCCTTATTTTGATGACATCCGGAACAAACCTGAGGTTATCGATCCTCCCCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAGCTGGAGGAAAACCTAATGTAGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACATTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCGTTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATACCAAACTTTTGGATGCGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAGTGTATATATCGACCCTATAACTGTCCATATGCGGGTTCGGAATGCTCGGTTATTGGTGACATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGACGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGATGGTCTTATTATCCAACGTAATATGGCACTCTTCTTCTCGGGAGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 915 45.03 MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARAGGKPNVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCIYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 314579 317642 - MELO3C012463.2.1 Cme10g00035 338921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00035 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Cme10g00035 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cme10g00035 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Cme10g00035 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Cme10g00035 304 CDD RING-HC_SIAHs 54 92 - -
Cme10g00035 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Cme10g00035 304 SUPERFAMILY TRAF domain-like 109 301 - -
Cme10g00035 304 SUPERFAMILY RING/U-box 48 96 - -
Cme10g00035 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Cme10g00035 304 MobiDBLite consensus disorder prediction 1 44 - -
Cme10g00035 304 CDD Sina 170 298 - -
Cme10g00035 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 304 - -
Cme10g00035 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00090 Cme-Chr5:575735 Cme10g00035 Cme-Chr10:314579 2.96E-156 dispersed
Cme09g01156 Cme-Chr9:16202302 Cme10g00035 Cme-Chr10:314579 0 dispersed
Cme10g00035 Cme-Chr10:314579 Cme11g02420 Cme-Chr11:31019888 5.39E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00035 K04506 - csv:101205198 638.262