Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g00035 | ATGACATCTGCAAATCCTTATTTTGATGACATCCGGAACAAACCTGAGGTTATCGATCCTCCCCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAGCTGGAGGAAAACCTAATGTAGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACATTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCGTTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATACCAAACTTTTGGATGCGTGGGCATATACCCATACTATAGCAAGCTGAAACACGAATCTCAGTGTATATATCGACCCTATAACTGTCCATATGCGGGTTCGGAATGCTCGGTTATTGGTGACATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGACGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGATGGTCTTATTATCCAACGTAATATGGCACTCTTCTTCTCGGGAGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA | 915 | 45.03 | MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARAGGKPNVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCIYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 314579 | 317642 | - | MELO3C012463.2.1 | Cme10g00035 | 338921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g00035 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | IPR008974 | GO:0005515 | |
Cme10g00035 | 304 | Pfam | Seven in absentia protein family | 98 | 297 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cme10g00035 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 164 | IPR013083 | - | |
Cme10g00035 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 109 | 169 | IPR013010 | GO:0008270 | |
Cme10g00035 | 304 | CDD | RING-HC_SIAHs | 54 | 92 | - | - | |
Cme10g00035 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 92 | IPR001841 | - | |
Cme10g00035 | 304 | SUPERFAMILY | TRAF domain-like | 109 | 301 | - | - | |
Cme10g00035 | 304 | SUPERFAMILY | RING/U-box | 48 | 96 | - | - | |
Cme10g00035 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 108 | IPR013083 | - | |
Cme10g00035 | 304 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cme10g00035 | 304 | CDD | Sina | 170 | 298 | - | - | |
Cme10g00035 | 304 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 7 | 304 | - | - | |
Cme10g00035 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 7 | 304 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g00090 | Cme-Chr5:575735 | Cme10g00035 | Cme-Chr10:314579 | 2.96E-156 | dispersed | |
Cme09g01156 | Cme-Chr9:16202302 | Cme10g00035 | Cme-Chr10:314579 | 0 | dispersed | |
Cme10g00035 | Cme-Chr10:314579 | Cme11g02420 | Cme-Chr11:31019888 | 5.39E-166 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g00035 | K04506 | - | csv:101205198 | 638.262 |