Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00052 ATGGCAGGAATGTTTAATGGGGAGGGTTCCTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCGTGGTCGTTATCACCCGGTATAGGATCGCCATACCCTTTTCTAAGAGAGCTCAAATCTGAAGAGAGGGGTTTGTGTTTGATTCACCTACTTCTTGGCTGTGCCAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTCGAGCAAATTTCCCACCTTGCTTCGCCAGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCCGATCGAATACTTAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATTCTGTCAGTCCCTGAAGAGATTCTTGCCCAAAGATTGTTCTTTGAATTGTGTCCTTTCTTGAAGCTTGCATATGTGATGACTAATCAGGCTATTATAGAAGCCATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAGGAAGTGTTGGAACAAATGGCTCTTCGGCTCACCGAAGAGGCAGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAGGGTTAAGACAGGTGAAGCACTTGCAGTTAGCTCTGTTCTTGAGCTTCATTCTGTTTTGGCTACAGATGACGATAAGAAAACGTCGCCATCTGCATCAAAGAATTTACAAAAACTCCTATGTATGAAGCAGCGAACACTAGGAGAGTGGCTTGAGACAGATTCATTGCAAGTTTTTAGTAGCCCAGATTCAGCCTCAGTATGCTCCCCATCAGGATTGAATCCTTCGCAAAAGATGACCAGTTTTTTGACTGCATTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAGCAAGAATCAAACCTGAATGGATCTGCTTTCATGGAAAGAGTACTAGAAGCATTGAACTTCTATGCTGCATTGTTTGATTGTTTAGAGTCAACCGTGTCACGATCATCGATCGAACGACAAAGGGTCGAGAAAATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGCAGAAAGGACGGAGAGGCACGAAAAGCTTGAGAAATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTACCATAGTATGTTATTGGGAAGTAGATTGTTGCAAAGCTATGGATATGATGGGTATAAAATCAAAGAAGAGAATGGATTTTTGTTCATCTGCTGGCAAGATAGGCCTCTTTTTTCAGTTTCAGCTTGGGGGTTTCAAAGGCAAAGCTCATGA 1410 42.77 MAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLGCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLCMKQRTLGEWLETDSLQVFSSPDSASVCSPSGLNPSQKMTSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQSS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 401939 404482 - MELO3C012447.2.1 Cme10g00052 338938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00052 469 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 464 - -
Cme10g00052 469 ProSiteProfiles GRAS family profile. 39 463 IPR005202 -
Cme10g00052 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 464 IPR005202 -
Cme10g00052 469 Pfam GRAS domain family 48 462 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00585 Cme-Chr2:6484355 Cme10g00052 Cme-Chr10:401939 0 dispersed
Cme08g02035 Cme-Chr8:25642962 Cme10g00052 Cme-Chr10:401939 1.91E-71 dispersed
Cme09g01376 Cme-Chr9:19022258 Cme10g00052 Cme-Chr10:401939 2.47E-71 dispersed
Cme10g00052 Cme-Chr10:401939 Cme03g00100 Cme-Chr3:1431480 5.51E-78 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42014 PF03514 GRAS 1.80E-135 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00052 - - cmo:103489486 931.398