Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00071 ATGGCCAAAGACGACGTCACGGCGGCGCGAGGGTTCTCCGGAAAGGACTACCACGACCCTCCTCCGGCCCCGCTCTTCGACGCCGCCGAGCTCGGCAAGTGGTCCTTTTACAGAGCCATCATTGCTGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACTATCTTGACTATTATCGGCTACAACAGCCAGACCGATACCAACAAGCCCGGCACCAACGCTTGCGATGGGGTCGGCATTCTCGGCATAGCTTGGTCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCTGGCATTTCAGGAGGGCACATAAACCCGGCGGTGACGTTCGGGCTGTTCTTGGCTCGTAAAGTGTCGTTAGTGCGAGCAGTAGCGTACATGATAGCTCAGTGTTTGGGGGCCGTGTGCGGTGCGGGGCTAGTAAAAGCCTTCCAAAAGTCTTACTACAACAAGTACGGCGGCGGTGCGAACCAACTCGCCCATGGCTACTCCAAAGGCACCGGCTTGGGAGCTGAAATCGTCGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACCGATTCCAAGAGAAATGCCAGAGACTCCCATGTTCCTGTATTGGCTCCACTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATCACCGGCACCAGCATCAACCCCGCAAGAAGCTTCGGCCCTGCTGTTATCTTGAATAGGGAAAAACCTTGGGATGACCATTGGATATTCTGGGTTGGGCCATTTGTGGGAGCCGCCATCGCAGCGTTCTACCACCAGTTCATATTGAGGGCCGGCGCCGCCAAAGCTCTCGGCTCTTTCAGGAGCAACCCCTCCGTCTGA 864 55.32 MAKDDVTAARGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTIIGYNSQTDTNKPGTNACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMIAQCLGAVCGAGLVKAFQKSYYNKYGGGANQLAHGYSKGTGLGAEIVGTFILVYTVFSATDSKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 533417 537099 - MELO3C012429.2.1 Cme10g00071 338957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00071 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cme10g00071 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cme10g00071 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 284 IPR034294 -
Cme10g00071 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cme10g00071 287 PANTHER AQUAPORIN PIP2-4-RELATED 10 284 - -
Cme10g00071 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme10g00071 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01283 Cme10g00071 CCT
Cme03g01283 Cme10g00071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02008 Cme-Chr8:25274615 Cme10g00071 Cme-Chr10:533417 5.42E-13 dispersed
Cme08g02312 Cme-Chr8:30098090 Cme10g00071 Cme-Chr10:533417 2.27E-168 dispersed
Cme01g01253 Cme-Chr1:15927926 Cme10g00071 Cme-Chr10:533417 3.57E-158 transposed
Cme10g00071 Cme-Chr10:533417 Cme11g01798 Cme-Chr11:26126094 6.91E-166 wgd
Cme10g00071 Cme-Chr10:533417 Cme03g01283 Cme-Chr3:22393800 3.67E-160 wgd
Cme10g00071 Cme-Chr10:533417 Cme04g02532 Cme-Chr4:31581885 3.29E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00071 K09872 - csv:101204956 578.556