Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00093 ATGGGTCCATCGGAGAAAGATATGGTGGTGAATCAACTGCCGGAGTCCGTGAGGGAGATTTCAGGGCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGACCTGATTCGAAGAGTCAAATTATTGAGCCCTCTGTTTGAAGAATTAAGAGATGGGGAAGAAGAAGTTGAGTTGGATGTTCTTAAGAGCTTGGAGTTGCTCAAAATTGCGTTGGATTCTGCTATTGAGCTTCTTAAGTCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCAGTCGGAAATGATTGGCCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCGCTCAGCAAGCTTCCCATTGACAAGCTTGGGATCTCGGACGAGGTTCGGGAACAGACTGAACTTGTTCATGCGCAATTCAAACGAGCAAAAGAGCGAGTAAGTTTAGCTGATACGCAATTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCCGACCCTGCAGTATTGAAGAGACTTTCTGAAAAGCTGCATCTTCGAACTCTAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGTTAGTGATCTCGAGTGATGGAGACCCTGAGGATGTTTTTGGTAAAATGTCGTCCATTTTAAAGAAGTTGAAGGATTTTGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGACGAAAAAACTACTACCATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTTATCGTTTCCACCGGGCAGACATATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACTTGTCCAAAATCTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGCGAGAACAATGGTGTTGAACTGCCAAAGAAGCAAGGTAGCTGTAGAAACAAGAAAGCCGGAAACAATGTTTCGGACTGTGATCGGTCAGCCATCGATGCGTTACTAGTAAATTTGGTAAATGGATCTCCAGAACAAAAAAGATCAGCTGCAGGCGAGCTCCGGTTACTAGCGAAGAGGAATTCGGATAACAGAATTTGTATTGCTGAGGCAGGAGCTATTCCATTCCTTGTTGAACTATTATCCTCGAATGACACTAGGACCCAGGAGCATGCAGTTACGGCGTTATTGAATCTTTCAATCAACGACGGTAACAAAAGAACCATTGTCGACTTACGAGCCATACCTGCCGTAGTAGAAGTGTTGAGAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACGCTTTTCAGTCTATCCGTAATTGACGAGAACAAGGTTGCAATCGGAGCAGCCGGGGCAATTCCTGCCCTTATTAGTTTGCTTCGAGAAGGTACGCCAAGAGGAAAGAAAGATGCTGCCACTGCTATTTTCAATCTATCAATATATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGAATTGTGAATCCACTTATGGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTCTAGCAATACTTGCAACTCACCATGAAGGAAAAACGGCAATAGGGGAAGCTGAGCCGATGACGATTCTGTTGGAGTTCATCAGAACAGGTTCTCCACGAAACCGGGAGAATGCTGCTGCTGTGCTGTGGTCGCTTTGTAGTACGGATTTCGAGCAGTTGAAGCTAGCTAGAGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGCACAGAGAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTGTTTCAACGTTTTGATAGACCATCACCTAATCTATAA 1884 44.0 MGPSEKDMVVNQLPESVREISGLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEVELDVLKSLELLKIALDSAIELLKSVSRGSKLFQASQSEMIGLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVSLADTQLDKDLAILQEEKDPDPAVLKRLSEKLHLRTLNDLKKESLAIHELVISSDGDPEDVFGKMSSILKKLKDFVQSENPEVETSQDEKTTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRNKKAGNNVSDCDRSAIDALLVNLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAVVEVLRNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGEAEPMTILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTERAKRKAGSILELFQRFDRPSPNL 627
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 668933 672526 + MELO3C012406.2.1 Cme10g00093 338979
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00093 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Cme10g00093 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 9 620 - -
Cme10g00093 627 CDD RING-Ubox_PUB 250 292 IPR045210 -
Cme10g00093 627 PANTHER U BOX DOMAIN-CONTAINING 9 620 - -
Cme10g00093 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Cme10g00093 627 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Cme10g00093 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Cme10g00093 627 Gene3D - 418 520 IPR011989 -
Cme10g00093 627 SUPERFAMILY RING/U-box 244 321 - -
Cme10g00093 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Cme10g00093 627 Gene3D - 9 119 IPR036537 GO:0007166
Cme10g00093 627 Gene3D - 521 624 IPR011989 -
Cme10g00093 627 SMART arm_5 455 495 IPR000225 GO:0005515
Cme10g00093 627 SMART arm_5 414 454 IPR000225 GO:0005515
Cme10g00093 627 SMART arm_5 373 413 IPR000225 GO:0005515
Cme10g00093 627 SMART arm_5 537 577 IPR000225 GO:0005515
Cme10g00093 627 SMART arm_5 496 536 IPR000225 GO:0005515
Cme10g00093 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Cme10g00093 627 SUPERFAMILY ARM repeat 340 616 IPR016024 -
Cme10g00093 627 Gene3D - 336 417 IPR011989 -
Cme10g00093 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Cme10g00093 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Cme10g00093 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Cme10g00093 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00093 Cme-Chr10:668933 Cme12g00199 Cme-Chr12:2053105 0 dispersed
Cme10g00093 Cme-Chr10:668933 Cme11g01284 Cme-Chr11:19590109 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00093 - - csv:101221065 1165.6