Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00106 ATGTTTCCTGTTCTTACCACTCTCTTCATATGGATGTTTGCTTCAATCTCTTGTGTCTCTTCGTCTTCTTCTTTCAATCTTACATTACCCCATCAACACCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCCATATGGAGAAGACAAATGCTGTCCATCGAATCAAAGGATCAAACATTCTCTTGTCTCACCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGTCGGCTAACCGCCAGCGACTGGCCGACTGTGGTATAGGGTTCGGGCGCGACGCTATGGGTGGCAAAGGTGGAAAGATCTACATCGTTACCGACTCGTCCGATTTGGATCCGGCGAACCCTACTCCGGGAACTCTCCGGCACGCTGTGATCCAATTCGAACCACTGTGGATCATATTCTCCGCCGACATGACTATAAGGCTGAAATACGAACTTATCATCAACAGTTTTAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGTATTACCATTCAATACGTGTCGAATGTCATCATCCACAACGTCCACGTGCACCATTGTAAACCCTCCGGCAATGCCAATATAAGATCGACTCCAACTCACGTGGGTCATCGAGGACTATCAGATGGAGATGGGATCTCAATATTTAGCTCGAGAAAGATATGGATTGACCACTGTTCATTGTCGTATTGTACTGATGGATTAATAGATGCAATAATGGGTTCGACAGGAATAACAATATCAAACAGCTACTTCTCGCACCATGATGAGGTAATGTTGTTAGGGCACGATGATCGATACGTGCAAGACTCAGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGTGAGGCATTGGTCCAACGCATGCCTCGATGTAGACATGGCTACATCCATGTCGTCAATAATGACTTCACTGCTTGGCAAATGTATGCCATTGGAGGTAGCGCCCAACCCACTATTAACAGTCAGGGTAATCGTTACACTGCTCCTGTGGACCCTAACGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACAGAATGGGCGGGGTGGAACTGGCGGACTGACGGCGATATTTTGGTGAACGGGGCGTTTTTTGTACCGTCCGGTGCCGGACTTAGCACCCAGTATGGTAAGGCGTCAAGCGTGGAGCCTAAGTCGGTGGCTCTCATCAATCAACTCACCATGAACGCCGGCGTCTTGGGCGCCCCAAGGTATACTGGTGGTGAAGGAATTGTATATCCAGGATTTAGCGGTGGAAATGGTGGAAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAACGGTGGTGGTGGTAATGGTAATAGTAATGGTAATGATGATTACTTTGGAATGATATTTAAAGCTAACGGTAATAGAATATTTCCAATATTTTCCTCCGTAAACTACCTATGTACTCTTCTAATTATATTTCTTATGTATATAGTCGCATATTATAGTGCTCTATTCTCTTTATAG 1536 46.61 MFPVLTTLFIWMFASISCVSSSSSFNLTLPHQHPDPDSVADELQRTVNASIWRRQMLSIESKDQTFSCLTGNPIDDCWRCDPNWSANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIRLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNVHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWQMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYTGGEGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGGNGNSNGNDDYFGMIFKANGNRIFPIFSSVNYLCTLLIIFLMYIVAYYSALFSL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 731398 736193 - MELO3C012394.2.1 Cme10g00106 338992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00106 511 Gene3D - 71 413 IPR012334 -
Cme10g00106 511 SMART amb_all 146 343 IPR002022 -
Cme10g00106 511 SUPERFAMILY Pectin lyase-like 62 390 IPR011050 -
Cme10g00106 511 PANTHER PECTATE LYASE 18-RELATED 5 430 IPR045032 GO:0030570
Cme10g00106 511 PANTHER PECTATE LYASE 5 430 - -
Cme10g00106 511 Pfam Pectate lyase 155 335 IPR002022 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Cme10g00106 511 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00452 Cme-Chr9:4346244 Cme10g00106 Cme-Chr10:731398 0 dispersed
Cme10g00106 Cme-Chr10:731398 Cme12g01634 Cme-Chr12:23484887 2.48E-178 dispersed
Cme08g02365 Cme-Chr8:30568265 Cme10g00106 Cme-Chr10:731398 1.08E-49 transposed
Cme08g01275 Cme-Chr8:9216899 Cme10g00106 Cme-Chr10:731398 0 transposed
Cme10g00106 Cme-Chr10:731398 Cme03g01236 Cme-Chr3:21945807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00106 K01728 - csv:101205739 972.615