Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00122 ATGAACTGTCTTCAAAACCTTTCAATATCATCTTCTCTTCCCTTCCGGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCTCTAACCTGGTGATAAGGAACTTTACTGATCTACATCGACGTTCTTCCATGAAGGCAGTGTCTGGTTCTACATCAAGTGCCGAAACGAGTGGTACAGAAGTGGACGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGGCATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAGAACAATTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTCGACCTACGACTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCCATAAACCGAAATGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCCGCTGTTGCGATGGCGTATATGTTTTGGGTTCAAGGCTACAAACTCAATGAGGCGCTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACTGCCGACATACTTTCAGGATTTAAAAAGAAGCCTGTTGCTTTATCTTGGGAAGATGACCAATGCTCAACTGTAGAAGTAGCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTCGCGGAAGGACGATATGAATACAAGTACATTATCGATGGTGTATGGACGTGCAACGAAAACGAGCTTGTCACTCCACCAAACAAAGATGGCCACATCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCAGGCAGTGATAGAGCAATTCTTCGAAGAAGGTTAACTGGAGATGAACCAGAACTCACGGCTGAAGAAAGAAGCAAAATAAGGCAATTTCTTGAAGCTTGTCCAGATGAAATTTGA 1143 42.26 MNCLQNLSISSSLPFRSFKCRQRKPEFQLSNLVIRNFTDLHRRSSMKAVSGSTSSAETSGTEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKSATADILSGFKKKPVALSWEDDQCSTVEVAGLDIGWGQRIPLKFDEARGAWILNRELAEGRYEYKYIIDGVWTCNENELVTPPNKDGHINNFIEVVEDEDPGSDRAILRRRLTGDEPELTAEERSKIRQFLEACPDEI 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 855992 865568 - MELO3C012378.2.1 Cme10g00122 339008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00122 380 CDD E_set_AMPKbeta_like_N 256 337 - -
Cme10g00122 380 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203|GO:0046838
Cme10g00122 380 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
Cme10g00122 380 Gene3D Protein tyrosine phosphatase superfamily 90 372 IPR029021 -
Cme10g00122 380 Pfam Glycogen recognition site of AMP-activated protein kinase 256 340 IPR032640 -
Cme10g00122 380 Gene3D Immunoglobulins 252 344 IPR013783 -
Cme10g00122 380 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 239 IPR029021 -
Cme10g00122 380 MobiDBLite consensus disorder prediction 48 75 - -
Cme10g00122 380 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 379 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cme10g00122 380 Pfam Dual specificity phosphatase, catalytic domain 154 235 IPR000340 GO:0008138|GO:0016311
Cme10g00122 380 SUPERFAMILY E set domains 255 337 IPR014756 -
Cme10g00122 380 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 232 IPR000387 GO:0016311|GO:0016791
Cme10g00122 380 SMART dsp_5 97 247 IPR020422 GO:0006470|GO:0008138
Cme10g00122 380 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00122 - - - csv:101212390 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01886 Cme-Chr4:26538163 Cme10g00122 Cme-Chr10:855992 1.00E-29 dispersed
Cme10g00122 Cme-Chr10:855992 Cme10g01211 Cme-Chr10:12400395 2.69E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00122 Cme_Chr10 FPKM 6.188495 6.466963 6.022152 5.886196 4.670219 4.760067 4.339387 4.846779 4.00812 4.395085