Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00122 ATGAACTGTCTTCAAAACCTTTCAATATCATCTTCTCTTCCCTTCCGGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCTCTAACCTGGTGATAAGGAACTTTACTGATCTACATCGACGTTCTTCCATGAAGGCAGTGTCTGGTTCTACATCAAGTGCCGAAACGAGTGGTACAGAAGTGGACGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGGCATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAGAACAATTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTCGACCTACGACTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCCATAAACCGAAATGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCCGCTGTTGCGATGGCGTATATGTTTTGGGTTCAAGGCTACAAACTCAATGAGGCGCTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACTGCCGACATACTTTCAGGATTTAAAAAGAAGCCTGTTGCTTTATCTTGGGAAGATGACCAATGCTCAACTGTAGAAGTAGCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTCGCGGAAGGACGATATGAATACAAGTACATTATCGATGGTGTATGGACGTGCAACGAAAACGAGCTTGTCACTCCACCAAACAAAGATGGCCACATCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCAGGCAGTGATAGAGCAATTCTTCGAAGAAGGTTAACTGGAGATGAACCAGAACTCACGGCTGAAGAAAGAAGCAAAATAAGGCAATTTCTTGAAGCTTGTCCAGATGAAATTTGA 1143 42.26 MNCLQNLSISSSLPFRSFKCRQRKPEFQLSNLVIRNFTDLHRRSSMKAVSGSTSSAETSGTEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKSATADILSGFKKKPVALSWEDDQCSTVEVAGLDIGWGQRIPLKFDEARGAWILNRELAEGRYEYKYIIDGVWTCNENELVTPPNKDGHINNFIEVVEDEDPGSDRAILRRRLTGDEPELTAEERSKIRQFLEACPDEI 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 855992 865568 - MELO3C012378.2.1 Cme10g00122 339008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00122 380 CDD E_set_AMPKbeta_like_N 256 337 - -
Cme10g00122 380 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203|GO:0046838
Cme10g00122 380 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
Cme10g00122 380 Gene3D Protein tyrosine phosphatase superfamily 90 372 IPR029021 -
Cme10g00122 380 Pfam Glycogen recognition site of AMP-activated protein kinase 256 340 IPR032640 -
Cme10g00122 380 Gene3D Immunoglobulins 252 344 IPR013783 -
Cme10g00122 380 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 239 IPR029021 -
Cme10g00122 380 MobiDBLite consensus disorder prediction 48 75 - -
Cme10g00122 380 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 379 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cme10g00122 380 Pfam Dual specificity phosphatase, catalytic domain 154 235 IPR000340 GO:0008138|GO:0016311
Cme10g00122 380 SUPERFAMILY E set domains 255 337 IPR014756 -
Cme10g00122 380 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 232 IPR000387 GO:0016311|GO:0016791
Cme10g00122 380 SMART dsp_5 97 247 IPR020422 GO:0006470|GO:0008138
Cme10g00122 380 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01886 Cme-Chr4:26538163 Cme10g00122 Cme-Chr10:855992 1.00E-29 dispersed
Cme10g00122 Cme-Chr10:855992 Cme10g01211 Cme-Chr10:12400395 2.69E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00122 - - csv:101212390 740.725