Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g00124 | ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGGGCAACGCTTCTAATGGTGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAAATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCTTTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAATTGGACCATCCTGACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTTGTCTGTCGGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTGGATGCCCTTGAATACATACATAGCATGGGATTGATACACCGAGATATCAAGCCTGAAAACTTGCTACTTACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACGGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGAACGGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCAGCAACTTTCGGAAATGACCTGTGGGCGCTCGGGTGCACCTTGTATCAGATGCTTTCTGGTACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAGAAAATCGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCCGAGCAAGCTAGGGACCTCATCGATCACCTATTGGATTTAGATCCCAGCAAGAGACCGGGTGCCGGAGCTGAGGGTTATGCTTCTCTCAAGAGCCATCCCTTCTTCAAGGGGGTTGATTGGAACAATATAAGATCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCAAATGAGAACGACGATGGCTCTGAGTCTTCTTGGAATCCTTCACATATTGGAGACGGCACATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCAGAAGGATCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGTATTTGCAACAATTCCTCGAACCCGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAACTAACAAGCAAAAAGGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATCTGGTCTGACAATCCTGTTGACCTCAGCGTTCAAGTGACCAGTCCTTCACATTTCAAGATTTGCACACCGAAGAAGATTGCCTCATTTGAGGACGCGAAACAGCGAGCGTGGCAGTGGAAGAAGGCGATCGAGGTGCTTCAAAATCGATGA | 1431 | 42.91 | MLAMEKDFDAKLMIQGNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPDMALESCEGGELFDQITRKGCLSEDEARFYTAEVVDALEYIHSMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPSKRPGAGAEGYASLKSHPFFKGVDWNNIRSQTPPRLALEAGSHSNENDDGSESSWNPSHIGDGTSRQNDGNAGSASTSEGSHHITRLASIDSFDSKWYLQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPVDLSVQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEVLQNR | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 882921 | 888367 | + | MELO3C012376.2.1 | Cme10g00124 | 339010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g00124 | 476 | Pfam | PH domain | 376 | 475 | IPR033931 | - | |
Cme10g00124 | 476 | SUPERFAMILY | PH domain-like | 290 | 475 | - | - | |
Cme10g00124 | 476 | CDD | STKc_PDK1 | 42 | 296 | IPR039046 | GO:0004674 | |
Cme10g00124 | 476 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 148 | 160 | IPR008271 | GO:0004672|GO:0006468 | |
Cme10g00124 | 476 | ProSiteProfiles | Protein kinase domain profile. | 44 | 296 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme10g00124 | 476 | SMART | serkin_6 | 44 | 296 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme10g00124 | 476 | PANTHER | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 | 18 | 472 | - | - | |
Cme10g00124 | 476 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 102 | - | - | |
Cme10g00124 | 476 | Pfam | Protein kinase domain | 46 | 296 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme10g00124 | 476 | Gene3D | - | 344 | 476 | IPR011993 | - | |
Cme10g00124 | 476 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 18 | 472 | - | - | |
Cme10g00124 | 476 | MobiDBLite | consensus disorder prediction | 314 | 357 | - | - | |
Cme10g00124 | 476 | Gene3D | Transferase(Phosphotransferase) domain 1 | 103 | 312 | - | - | |
Cme10g00124 | 476 | SUPERFAMILY | Protein kinase-like (PK-like) | 41 | 353 | IPR011009 | - | |
Cme10g00124 | 476 | MobiDBLite | consensus disorder prediction | 323 | 357 | - | - | |
Cme10g00124 | 476 | Coils | Coil | 456 | 476 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g00124 | Cme-Chr10:882921 | Cme02g01924 | Cme-Chr2:25629556 | 3.89E-55 | dispersed | |
Cme10g00124 | Cme-Chr10:882921 | Cme08g00116 | Cme-Chr8:871731 | 6.21E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65183 | PF00069 | Pkinase | 1.20E-54 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g00124 | K06276 | - | csv:101212874 | 924.465 |