Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00124 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGGGCAACGCTTCTAATGGTGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAAATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCTTTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAATTGGACCATCCTGACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTTGTCTGTCGGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTGGATGCCCTTGAATACATACATAGCATGGGATTGATACACCGAGATATCAAGCCTGAAAACTTGCTACTTACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACGGTTCTCCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGAACGGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCAGCAACTTTCGGAAATGACCTGTGGGCGCTCGGGTGCACCTTGTATCAGATGCTTTCTGGTACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAGAAAATCGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCCGAGCAAGCTAGGGACCTCATCGATCACCTATTGGATTTAGATCCCAGCAAGAGACCGGGTGCCGGAGCTGAGGGTTATGCTTCTCTCAAGAGCCATCCCTTCTTCAAGGGGGTTGATTGGAACAATATAAGATCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCAAATGAGAACGACGATGGCTCTGAGTCTTCTTGGAATCCTTCACATATTGGAGACGGCACATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCAGAAGGATCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGTATTTGCAACAATTCCTCGAACCCGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAACTAACAAGCAAAAAGGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATCTGGTCTGACAATCCTGTTGACCTCAGCGTTCAAGTGACCAGTCCTTCACATTTCAAGATTTGCACACCGAAGAAGATTGCCTCATTTGAGGACGCGAAACAGCGAGCGTGGCAGTGGAAGAAGGCGATCGAGGTGCTTCAAAATCGATGA 1431 42.91 MLAMEKDFDAKLMIQGNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPDMALESCEGGELFDQITRKGCLSEDEARFYTAEVVDALEYIHSMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPSKRPGAGAEGYASLKSHPFFKGVDWNNIRSQTPPRLALEAGSHSNENDDGSESSWNPSHIGDGTSRQNDGNAGSASTSEGSHHITRLASIDSFDSKWYLQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPVDLSVQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEVLQNR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 882921 888367 + MELO3C012376.2.1 Cme10g00124 339010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00124 476 Pfam PH domain 376 475 IPR033931 -
Cme10g00124 476 SUPERFAMILY PH domain-like 290 475 - -
Cme10g00124 476 CDD STKc_PDK1 42 296 IPR039046 GO:0004674
Cme10g00124 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cme10g00124 476 ProSiteProfiles Protein kinase domain profile. 44 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00124 476 SMART serkin_6 44 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00124 476 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 18 472 - -
Cme10g00124 476 Gene3D Phosphorylase Kinase; domain 1 2 102 - -
Cme10g00124 476 Pfam Protein kinase domain 46 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00124 476 Gene3D - 344 476 IPR011993 -
Cme10g00124 476 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 472 - -
Cme10g00124 476 MobiDBLite consensus disorder prediction 314 357 - -
Cme10g00124 476 Gene3D Transferase(Phosphotransferase) domain 1 103 312 - -
Cme10g00124 476 SUPERFAMILY Protein kinase-like (PK-like) 41 353 IPR011009 -
Cme10g00124 476 MobiDBLite consensus disorder prediction 323 357 - -
Cme10g00124 476 Coils Coil 456 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00124 Cme-Chr10:882921 Cme02g01924 Cme-Chr2:25629556 3.89E-55 dispersed
Cme10g00124 Cme-Chr10:882921 Cme08g00116 Cme-Chr8:871731 6.21E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65183 PF00069 Pkinase 1.20E-54 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00124 K06276 - csv:101212874 924.465