Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00140 ATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGCGTCACCAACGAGACTATTGCTTTGAAGAAGATCCGGTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATCCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTGAGGTTACAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTTGAGTACCTGGATTTGGATTTGAAGAAGCATATGGATTCCTCTCCTGAATTTTCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTGCTGATTGACCGTCGTACCAATGCTCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGCATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTGCTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGCATATTTGCTGAGATGGTTAATCAGCGACCGTTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGAATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAATGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTAA 885 44.41 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARNALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1009312 1014634 + MELO3C012361.2.1 Cme10g00140 339026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00140 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Cme10g00140 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cme10g00140 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Cme10g00140 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cme10g00140 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Cme10g00140 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cme10g00140 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cme10g00140 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00140 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00140 294 PANTHER - 3 291 - -
Cme10g00140 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01701 Cme-Chr2:24087177 Cme10g00140 Cme-Chr10:1009312 7.78E-91 dispersed
Cme06g02415 Cme-Chr6:31278187 Cme10g00140 Cme-Chr10:1009312 2.55E-69 dispersed
Cme08g02049 Cme-Chr8:25862569 Cme10g00140 Cme-Chr10:1009312 6.88E-123 dispersed
Cme10g00140 Cme-Chr10:1009312 Cme05g00041 Cme-Chr5:296340 1.17E-87 dispersed
Cme12g01645 Cme-Chr12:23563504 Cme10g00140 Cme-Chr10:1009312 8.35E-25 dispersed
Cme10g00140 Cme-Chr10:1009312 Cme10g00639 Cme-Chr10:4065775 1.26E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65184 PF00069 Pkinase 7.40E-81 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00140 K02206 - csv:101217311 593.578