Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00186 ATGATTTTTCTAAAAATTTATATCCACATGGACGGTTTATTAAAATTTAATGAAATTAGACCTCAGACGTTTTTGTCTACATCCGCCTTCCGACTAATTTCGCCTAATTTCCGATTTCCGCACTTATTCTCCCGCCCTCTATATAAACCCTCTCTACTTCTTCACTCACTGAGTCACTTCCGAGTTTACAAAACCATGAACTCACTTCCATTCATTTTCCTTCTCCTTCTCTCTCTCAACTTCGCCGGAGCTTCCGTCTCTCCTCCGTCCTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCTATACGCTTCTCCCCTTCCGATCCATACGGCTACGGAAAATTTTCCGTCAAGCAATGTATCAAACAAGCGATCAAAATGTCGACAGTAATCGGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCGGCGAGAGGCCGGCGCTCTGAGTGACTGCAGAGAGCTCTCCGATTTGAATGTGGAATTTCTTCGGTCGATTGAGAGTGTATTGGAAGCGGCAGAGGGAGTCGATGAGGAACTGGTGGAGCGGGTTGAGAGTACTTTGAGCGCGATCGTGACGAACGGCCAGACTTGCGTCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAAGGCGCTATCGGCGCCGCTTTTGAGCGCTGGAGAGCTGTACAGTGTGTCGTTGGGATTGGTCTCGAACGCTATGTCGCGGCGGTGGAAGAAGCGTCGGGAGAAGGGAGGCGGAAACGGAGGGGTTCCGGGGGGTGGGCGGAGCAGAGAGGCATTGAACACGCTGATCAAGGGACTACATAAAATGGAACCATGCAACAACCACTCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCTCAGGAATTTTGATAAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTCATCTATGTCAGGGAAGGATACTATGAAGAATACGTCGTCGTCCCCAAATTCAAAACCAATATAATGCTTATTGGAGACGGCATTAACCGAACCATCATCACCGGGAACCATAACGTCGTTGATGGTTGGACAACTTATAATTCTTCTACCTTCAACAAAAACGAAGACTTAAAAGCAACGATTTCTGTTAGAAAACGATATGTATATGACCTAAGACGGTATGACGCTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTCAGGAACACAGCAGGACCAGAAAAGCACCAAGCAGTAGCATTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTACATTCCCTAAGACAATTCTATAGAGAATGTGATATTTATGGAACTGTTGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCAAGAAAGCCACTCCCCAACCAAAAAAACGCCTTCACCGCACAGGGTCGAACCGATCCGAACCAAAACACAGGCATCTCAATCCACAACTGCACCATCAAGGCTGCGCCCGACTGGGTAATGGATTCGAATACAACAACGACAAACTATCTTGGTCGGCCGTGGAAGCAGTACTCGAGGACAGTGTATATGCAATCTTATATTGGGGATTTGATAAGCCCAGTTGGGTGGTTGGAATGGAATGGAACAGTTGGATTGGAGACATTGTACTATGGAGAGTATGAGAATTATGGACCTGGAGCTAATACAAGTTTGAGAGTGAATTGGCCTGGATTTAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGTTGCCTTATACTGATATCCCTTTCTCTGGAGGTTTGCTAATTAAGTAA 1965 45.55 MIFLKIYIHMDGLLKFNEIRPQTFLSTSAFRLISPNFRFPHLFSRPLYKPSLLLHSLSHFRVYKTMNSLPFIFLLLLSLNFAGASVSPPSSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKQCIKQAIKMSTVIGDYLDRGRDSRLNRREAGALSDCRELSDLNVEFLRSIESVLEAAEGVDEELVERVESTLSAIVTNGQTCVDGLVESRSSLGKALSAPLLSAGELYSVSLGLVSNAMSRRWKKRREKGGGNGGVPGGGRSREALNTLIKGLHKMEPCNNHSTKCSGRKRLLTDLGSSGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVVPKFKTNIMLIGDGINRTIITGNHNVVDGWTTYNSSTFNKNEDLKATISVRKRYVYDLRRYDAVCGDGFVAIDVTFRNTAGPEKHQAVALRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTIKAAPDWVMDSNTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEYENYGPGANTSLRVNWPGFSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1255016 1260649 - MELO3C012316.2.1 Cme10g00186 339072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00186 654 CDD PMEI-like_3 93 244 - -
Cme10g00186 654 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 93 244 IPR035513 -
Cme10g00186 654 Pfam Pectinesterase 314 400 IPR000070 GO:0030599|GO:0042545
Cme10g00186 654 Pfam Pectinesterase 422 637 IPR000070 GO:0030599|GO:0042545
Cme10g00186 654 PANTHER PECTINESTERASE 70 398 - -
Cme10g00186 654 SMART PMEI_2 86 241 IPR006501 GO:0004857
Cme10g00186 654 SUPERFAMILY Pectin lyase-like 309 650 IPR011050 -
Cme10g00186 654 MobiDBLite consensus disorder prediction 251 270 - -
Cme10g00186 654 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 217 IPR006501 GO:0004857
Cme10g00186 654 Pfam Plant invertase/pectin methylesterase inhibitor 93 238 IPR006501 GO:0004857
Cme10g00186 654 Gene3D - 310 653 IPR012334 -
Cme10g00186 654 PANTHER PECTINESTERASE 422 651 - -
Cme10g00186 654 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 70 398 - -
Cme10g00186 654 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 422 651 - -
Cme10g00186 654 Gene3D Invertase/pectin methylesterase inhibitor family protein 92 245 IPR035513 -
Cme10g00186 654 ProSitePatterns Pectinesterase signature 2. 484 493 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00186 Cme-Chr10:1255016 Cme01g02238 Cme-Chr1:31058209 3.90E-135 dispersed
Cme04g00242 Cme-Chr4:1915220 Cme10g00186 Cme-Chr10:1255016 1.28E-168 transposed
Cme11g00219 Cme-Chr11:2579673 Cme10g00186 Cme-Chr10:1255016 7.59E-83 transposed
Cme10g00186 Cme-Chr10:1255016 Cme09g01369 Cme-Chr9:18920596 3.96E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00186 K01051 - csv:101206112 1040.41