Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00187 ATGAAACCAACAACGCGGCCGCTGCCGCCTCCGCCTCTCCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAAGGAAGATTTTGCAGGAGCTTACGATAACGAGGAGGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAGTACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAGATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGTTTTTCGAGAGGTGTTTCTAAGTATCGTGGAGTCGCGCGGCACCACCACAACGGTCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTATATTTGGGAACTTACAACACACAAGAAGAAGCAGCAGCAGCATATGACATGGCAGCAATTGAATACAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCACTTCTTGAAGAAGCAACACAACAAACAGATGACCCTAATTACTCCCCTGTTTCTTCCGAAGGAGAAGTAGTACAACAACAACAACAGGATCAACAGCAGCAACAACAACAACAAACGACATTATTCTCGGGCCCTCCCGACCTCCAGTTCTCAATCGAGAGCAACCCGGCAATGGTCGTCATGGACGAACCACCAACACAAGATGACCACGATCTGCACTGGTCATTTTTAGACACGGGATTATTCGTACAGGTCCCCGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGATCTGTACTTCGACGAGATCGGGTTTGAGGACGACATTGGAATGATGTTCGAAGCAAGCTTAGAGAACAATAACTGTGAGGCGAATAATAATAGTAGTAATAGTAACAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1095 47.03 MKPTTRPLPPPPLPLAGAPFTEESLGTDGPAGSKLIFGTRVHGITFRTKKEDFAGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSLLEEATQQTDDPNYSPVSSEGEVVQQQQQDQQQQQQQQTTLFSGPPDLQFSIESNPAMVVMDEPPTQDDHDLHWSFLDTGLFVQVPDLPLEKSSELADLYFDEIGFEDDIGMMFEASLENNNCEANNNSSNSNNNNNNNVGKMEVNEKIRLFSTTTSPSSSSITTSVSCEFRV 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1264092 1268928 - MELO3C012314.2.1 Cme10g00187 339073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00187 364 SUPERFAMILY DNA-binding domain 119 180 IPR016177 GO:0003677
Cme10g00187 364 CDD AP2 119 180 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 ProSiteProfiles AP2/ERF domain profile. 14 84 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 Pfam AP2 domain 119 170 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 355 - -
Cme10g00187 364 Gene3D AP2/ERF domain 38 86 IPR036955 GO:0003700|GO:0006355
Cme10g00187 364 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Cme10g00187 364 MobiDBLite consensus disorder prediction 194 239 - -
Cme10g00187 364 SUPERFAMILY DNA-binding domain 47 86 IPR016177 GO:0003677
Cme10g00187 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 53 355 - -
Cme10g00187 364 MobiDBLite consensus disorder prediction 1 31 - -
Cme10g00187 364 SMART rav1_2 35 90 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Cme10g00187 364 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00187 Cme-Chr10:1264092 Cme05g01005 Cme-Chr5:14308733 2.66E-12 dispersed
Cme10g00187 Cme-Chr10:1264092 Cme08g00672 Cme-Chr8:4410391 5.74E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42024 PF00847 AP2 5.20E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00187 - - csv:101206349 504.212