Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00212 ATGGCCGACTCCCCATTGCTGGAATGTATCGAGAGTCGCGGTGAAACAACATGGGCATCTTTCTTTCGGGAAGTGAAAGTTGTTGGGTTCTTAGCAGCTCCATTGGCTGCTATCAATCTCTCTCAGTTCTTGATTCAGACTGGTTCTTTGATGATCGTGGGTCATCTCGATGAACTCTCTCTCTCCAGCACCGCCATAGCCGTCTCTTTAGCTGCTGTTACTGGATTCAGTGTGATTATAGGTATGGGTAGTGCCCTTGAAACTCTATGTGGGCAGGCTTATGGTGCTGGACAATATCGAAAATTTGGAAATCATATTTACACTGCTATGGTATGTCTCCTAGTAGTTTGCCTGCCAATAACTCTGTTATGGATCAACATGGGGAAGCTACTTGTTTTGGTTGGCCAAGATCCTTTGATATCACATGAAGCTGGGAGGTTCATGATTTGGCTTATTCCTGGGCTCATTGCTTATGCATTTCTTCAGCCACTTATGAGATATTTTCAGATGCAAGTTTTAGTAATTCCCATGCTTGTAATTAGTTGGATCACCTTTTGTCTGCACATACCCCTCTGTTGGGTTTTGGTGTATAAAACCGGATTCCATAACCTTGGTGGAGCTTTAGCCATGAGTATTTCATATTGGGTGAATGCAATTTTTCTTGGGTTATATATGAAATTTTCTCCCAAGTGTGGAAAAACTCACGGTGCAATTTCTATGGAGGTGTTCAAAGGAATCAGAATCTTCCTTCGCTTTGCTATCCCTTCTGCAGTAATGACTTGCCTTAGTTGGTGGTCGTTTGAGCTGATTATCTTACTTTCTGGATTTCTTCCAAATCCAGAGCTTGAATCCTCAGTTCTATCTGTTTGCTTCAATACCTTGACAACGGCATTTACATTAGCCTATGGAATCGGCAGTGCAGGAAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAAGCCGGAAGCCGCTCGCAAAGCTGCTGGGGCAGCAATATTTCTTGCTGTTGTAGAGATCATCATAGCGAGTGTGGTCCTCTTTGCTGTTCGTCATGTTTTCGGTTATGCTTTCAGCAGCGAAAAGGAAGTTGTGGATTATGTTTCTGTCATGGCTCCCCTAGTTTGTATATCAATTATTATGGATGCCATTCAAGGGGTCATTTCAGGTATTGCAAGAGGATGTGGTTTGCAGCATATAGGGGCTTATATAAACTTAGGGGCTTTCTATCTCTGTGGAAACCCAGCTGCTATAGCTCTTGGTTTCTGGGCAAATCTGAGAGGCAAGGGCCTATGGATTGGCATCCAAATTGGAGCTTTCGTGCAGATGCTTCTACTTGTGATCGTCGTGAGCCATATAAATTGGAAAAACGAGGTCTGA 1377 43.5 MADSPLLECIESRGETTWASFFREVKVVGFLAAPLAAINLSQFLIQTGSLMIVGHLDELSLSSTAIAVSLAAVTGFSVIIGMGSALETLCGQAYGAGQYRKFGNHIYTAMVCLLVVCLPITLLWINMGKLLVLVGQDPLISHEAGRFMIWLIPGLIAYAFLQPLMRYFQMQVLVIPMLVISWITFCLHIPLCWVLVYKTGFHNLGGALAMSISYWVNAIFLGLYMKFSPKCGKTHGAISMEVFKGIRIFLRFAIPSAVMTCLSWWSFELIILLSGFLPNPELESSVLSVCFNTLTTAFTLAYGIGSAGSTRVSNELGAGKPEAARKAAGAAIFLAVVEIIIASVVLFAVRHVFGYAFSSEKEVVDYVSVMAPLVCISIIMDAIQGVISGIARGCGLQHIGAYINLGAFYLCGNPAAIALGFWANLRGKGLWIGIQIGAFVQMLLLVIVVSHINWKNEV 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1430599 1433395 + MELO3C034028.2.1 Cme10g00212 339098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00212 458 Pfam MatE 255 414 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cme10g00212 458 Pfam MatE 34 194 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cme10g00212 458 PANTHER PROTEIN DETOXIFICATION 14 23 456 - -
Cme10g00212 458 CDD MATE_eukaryotic 24 458 IPR045069 GO:0042910|GO:1990961
Cme10g00212 458 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 456 - -
Cme10g00212 458 TIGRFAM matE: MATE efflux family protein 34 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00212 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101208050 834.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00424 Cme-Chr7:2799471 Cme10g00212 Cme-Chr10:1430599 3.49E-97 dispersed
Cme09g00061 Cme-Chr9:436810 Cme10g00212 Cme-Chr10:1430599 8.65E-126 dispersed
Cme10g00210 Cme-Chr10:1409502 Cme10g00212 Cme-Chr10:1430599 0 dispersed
Cme10g00211 Cme-Chr10:1423133 Cme10g00212 Cme-Chr10:1430599 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g385 . . . . . . . . . . . . . . . . . Bhi07g01255 . . . Hepe01g1150 . . . . . . . . . . Cone19ag0795 . . Lsi04g00208 Csa05g02659 . Cme10g00212 . . . . . . . . . . . . . . . . Cpe04g01386 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00212 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0