Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00216 ATGACCCTCTGCTTTTGCGTTAGAGCTTCAAAAGCTATTGCTACCACCACTGCTATTTACCCTTTTTGTTTCAAGGTACGCCGTCTCTTTCCCTTCTCTTCATTCCTCCATTCCTGCACTTTAAACAACGCTATTGCAACGCTCTCGGAAACCCATTATAGAGATCTTATCTTTGATACCATTAAAGAAAAGCCTTGGGCTTTTTGCAACAATAACTGGGTCTCTGATCAATTTGGTGCTGTGATCACCGACCCTCATTTGTTAATTCGAGTCCTTCATTCCATTCGAATTAGACCTAGAGTTGCCTTGCGTTTCTTCCGATGGGTAATGGCTCAACCCGATTTTAAGGGGTCGGAATTTGTGTTTTGTGCTATTCTTGATATTCTTGTTCAGAATAATTTGATGAGGTCTGCGTATTGGGTGATGGAGAGGGTGGTTAGCATTGAAATGCACGGAGTTGTCGATCTTTTAATAGCTGGGCATATTTGTTTAAAAGCTTCAATTAAGCTTCTTGATATTCTGTTGTGGATATACACGAAGAAATCAATGGTTGAAGAATGCTTGTTGGTTTTTGATAAAATGATTCGGAATGGTTTACTGCCTGATGTTAAGAACTGTAATAGGATTCTCAGGGTTCTAAGAGATGATAATCTTCTGAGTAAAGCTAAAAATGTGTATGGGATGATGGAACAGTTTGGGATAAAGCCAACTGTTGTCACTTATAATACTATGCTGGATTCCTATTGCAAGGAGGGGAGAGTAGATCAAGCTTTAGAGCTTTTATCAGAGATGCAAGAGAGAGGGTGTTACCCAAATGATGTAACATATAATGTGTTGGTCAATGGGTTGTCGAAGAAAGGGGAGCTTGAACAAGCAAAGGGACTCATTGAGGAGATGTTGAACTCTGGGCTCAATGTTTCAGCATACACATATAATCCGTTGATCAATGGTTTTTGCAAGAAAGGATTACTGCGGTTTTCTGATATGTTGAATAGCAAGTGTACGCCTGACATAGTTTCATTCAATATCTTACTGCATGGTTACTGTAGGACTGGGTGTATAAGTGAGGCTTTTCTATTGTTTGATGAATTGAAATGCAGAGATCTTGTTCCGACTGTGGTAACATATAATACACTTATATATGGTCTTTGCATGTGGGGTTACTTGGATGTTGCTTTGCAGTTGAAAAAGGAAATGACTGATCAAGGGTTATTCCCTGATATCTTTACCTATACTATACTGGTTAATGGTTGTTTCAAGTTGGGGCATTCATCAATGGCCAGAGACTTCTTTAATGAGATGTTGTGCCAAGGGTTGAAGCCTGATCGTTTTGCTTACATTACTCGAATAGTAGGAGAAATGAAGATTGGAGATACATCTGTAGCGTTTAGCATGCGAGAAGAAATGTTGGCAGCGGGTTTTCCTCCAGATGTCGTCACATACAATGTTTTTGTGCATGCACTTTGCCAACAGGGAAATTTTGAAGAGGCATGTGATCTATTAGAGAACATGGTGCGTGATGGTCTTGTTCCGGATCATGTCACGTACACTAGTATCATTAATGGTTTCGTGAAAAATGGGCACTTGAGGAAGGCTAGAGAGGTTTTCAATGAAATGCTCAGCAAGGGTGTAGCCCCTTCTGTAGTAACGTATACAGTTCTCATTCATGCACATGCAGCTAAGCAAATGCTGGATCTAGCGTTTATGTACTTCTCGAAAATGCTGGAGAAGAGTGTTCCAGCAAACGTGATTACGTACAATGCAATAATTAATGGTCTTTGTATGGCAAGGAGAATGGACGAGGCTTATAAATATTTTGATGAGATGGAAGAAAAAGGAATTCTTCCAAATAAATTCAGTTATACCATATTAATAAATGAGAGCTGCAATATGGATTATTGGGAGGAAGCTCTAAGATTGTACAGGGAAATGCTAGATAGAAATATTCAGCCTGATTCTTTTACACATAGCGTGCTTCTGAAGAATCTACATAGGGATTATAAAGTTCATGCAGTACAGTGTGTAGAGAGTCTGATTCAAAATGTCGAAGATAATGTTAATGCCAGGTGA 2070 39.32 MTLCFCVRASKAIATTTAIYPFCFKVRRLFPFSSFLHSCTLNNAIATLSETHYRDLIFDTIKEKPWAFCNNNWVSDQFGAVITDPHLLIRVLHSIRIRPRVALRFFRWVMAQPDFKGSEFVFCAILDILVQNNLMRSAYWVMERVVSIEMHGVVDLLIAGHICLKASIKLLDILLWIYTKKSMVEECLLVFDKMIRNGLLPDVKNCNRILRVLRDDNLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCKKGLLRFSDMLNSKCTPDIVSFNILLHGYCRTGCISEAFLLFDELKCRDLVPTVVTYNTLIYGLCMWGYLDVALQLKKEMTDQGLFPDIFTYTILVNGCFKLGHSSMARDFFNEMLCQGLKPDRFAYITRIVGEMKIGDTSVAFSMREEMLAAGFPPDVVTYNVFVHALCQQGNFEEACDLLENMVRDGLVPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMARRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMDYWEEALRLYREMLDRNIQPDSFTHSVLLKNLHRDYKVHAVQCVESLIQNVEDNVNAR 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1441234 1445905 + MELO3C012287.2.1 Cme10g00216 339102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00216 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 326 681 - -
Cme10g00216 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 95 325 - -
Cme10g00216 689 Pfam PPR repeat family 511 558 IPR002885 -
Cme10g00216 689 Pfam PPR repeat family 236 285 IPR002885 -
Cme10g00216 689 Pfam PPR repeat family 582 630 IPR002885 -
Cme10g00216 689 Pfam PPR repeat family 336 384 IPR002885 -
Cme10g00216 689 Pfam PPR repeat 473 505 IPR002885 -
Cme10g00216 689 Pfam PPR repeat 303 324 IPR002885 -
Cme10g00216 689 Pfam PPR repeat 403 434 IPR002885 -
Cme10g00216 689 Pfam PPR repeat 174 199 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 584 617 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 178 203 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 549 582 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 409 442 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 274 306 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 619 653 IPR002885 -
Cme10g00216 689 TIGRFAM PPR: pentatricopeptide repeat domain 479 512 IPR002885 -
Cme10g00216 689 Gene3D Tetratricopeptide repeat domain 324 453 IPR011990 GO:0005515
Cme10g00216 689 Gene3D Tetratricopeptide repeat domain 217 323 IPR011990 GO:0005515
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cme10g00216 689 PANTHER OS12G0152600 PROTEIN 326 681 - -
Cme10g00216 689 PANTHER OS12G0152600 PROTEIN 95 325 - -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Cme10g00216 689 Gene3D Tetratricopeptide repeat domain 91 216 IPR011990 GO:0005515
Cme10g00216 689 Gene3D Tetratricopeptide repeat domain 562 684 IPR011990 GO:0005515
Cme10g00216 689 Gene3D Tetratricopeptide repeat domain 454 561 IPR011990 GO:0005515
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cme10g00216 689 SUPERFAMILY HCP-like 408 611 - -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cme10g00216 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00216 - - - csv:101208294 833.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme09g01412 Cme10g00216 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00336 Cme-Chr4:2677401 Cme10g00216 Cme-Chr10:1441234 5.08E-09 dispersed
Cme10g00216 Cme-Chr10:1441234 Cme01g00035 Cme-Chr1:286648 4.02E-42 dispersed
Cme10g00216 Cme-Chr10:1441234 Cme01g02021 Cme-Chr1:28794949 2.93E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00216 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0