Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00219 ATGGGACTTTATAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTTTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGAGAGAATTTCTCTCTCAAAAGTCTAGGTGTAAAGGTTTTCAAGATATCTCTGTCTCTAGAACAAGCAGCAGCGGAAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGGATCTAGTAAGGCCGTGATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAAGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATGCTGGAATTCCGGAGAAATCTTCCTGCTTACAAGGAGAAGGATGCATTATTGGCCACAATCTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCGGCTATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGGGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACTACGGGTATCTTGTTGAGAAGATTGCTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGATGAAATTCACGAGCGTGGAATGAATGAAGATTTTCTACTAATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCATATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAAGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGACAGGAGAAGACGTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACCGTTCAGGATGCCCTTACAGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTTAAAATATGTGAGAGCGAAACACCTGGAGCTATTCTTGTGTTTATGACTGGGTGGGATGACATCAGTTCTCTCAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCAACTCGTGTCATGTTGTTGGCATGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGAGTGAGGAAGGTAGTGCTCGCAACAAATATTGCCGAGACAAGTATAACGATAAATGATGTCGTGTATGTTCTGGACTGTGGAAAGGCGAAAGAAACATCATACGATGCTTTAAATAACACTCCTTGTTTGCTTCCCTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGCTACCATCTATACCCTAGGTGTGTGTTTGGTTCTTTTTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAAGCTTGGAAGTATATCGGAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCTACTTGCGGTTCAGAATGCTATTGAATATTTGAAGATCATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTAACTATGCTCCCAATGGAACCAAAACTGGGAAAGATGTTGATAGTAGGCGCTATCTTCAATTGCTTGGATCCTATTTTGACTGTTGTTGCTGGTCTCAGTGTGAGAGACCCTTTTCTCACGCCACTTGAGAAGAAGGATGCCGCAGAGGCTGCAAAATCCCAATTTTCACAAGATCATAGCGATCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCCGAGAGGAACTATGGTGGATATGACTTTTGTTGGAAGAACTTCCTTTCTATACAATCAATGAAGGCTATTGATTCTTTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAATGCCTGGAGTCTTGATGAACAACTCATACGTGCAGTTATTTGCAATGGCCTCTATCCTGGAGTTTGCTCCGTTGTGCAAAATGAGAAGTCATTTTCTCTCAAAACAATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCGGTGAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAATGAGAAGATTAAAGTGAACTCCATTTTCCTTAGAGATTCAACAGCTATCTCTGACTCGATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCATGAGGGACACTTGAAAGTGCTGGGCGGTTTTTTGGAATTTTTTATGAAACCTGATTTAGCAGAGACATATCAGAAATTGAGAGTGGAACTTGAAGAACTTATACGAATAAAGCTACTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCATTGTGAAGGTCGATTTGTTTTTGGCCGCCAGATCCTTCAGCAGCCGTCCAAGACATCAGCTCCAGCAGCAGCACCACCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGGGACAATTCCAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTGAAGAACAATCAATTTCGAGCAACTGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCTGAAAAGGATGCAGCAGCCGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGATGGGGCACGACTATGTCAACCAAATGTCTATGATGTTAAAAAGGAGCAAGAAGGATCATAACTGA 3081 42.45 MGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVFLPPGLLRRVDEHLREFLSQKSRCKGFQDISVSRTSSSGSIATDEGLFEQPEPQGSSKAVMEKILWRRSSHLRDQQQAWQSSLEGREMLEFRRNLPAYKEKDALLATISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTVQDALTAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVKICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICNGLYPGVCSVVQNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKVLGGFLEFFMKPDLAETYQKLRVELEELIRIKLLNPKMDLHSHHELLSAVRLLISEDHCEGRFVFGRQILQQPSKTSAPAAAPPPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQMGHDYVNQMSMMLKRSKKDHN 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1459864 1474845 - MELO3C012285.2.1 Cme10g00219 339105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00219 1026 Pfam Double-stranded RNA binding motif 938 1000 IPR014720 -
Cme10g00219 1026 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 307 IPR014001 -
Cme10g00219 1026 PANTHER ATP-DEPENDENT RNA HELICASE 1 946 - -
Cme10g00219 1026 CDD DEXHc_RHA-like 146 306 - -
Cme10g00219 1026 Gene3D - 570 681 - -
Cme10g00219 1026 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 568 IPR001650 -
Cme10g00219 1026 CDD SF2_C_RHA 311 536 - -
Cme10g00219 1026 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 937 1002 IPR014720 -
Cme10g00219 1026 Pfam Helicase associated domain (HA2) 591 668 IPR007502 GO:0004386
Cme10g00219 1026 SUPERFAMILY dsRNA-binding domain-like 933 1015 - -
Cme10g00219 1026 MobiDBLite consensus disorder prediction 912 939 - -
Cme10g00219 1026 Pfam DEAD/DEAH box helicase 140 290 IPR011545 GO:0003676|GO:0005524
Cme10g00219 1026 SMART helicmild6 422 528 IPR001650 -
Cme10g00219 1026 SMART ha2_5 590 680 IPR007502 GO:0004386
Cme10g00219 1026 Gene3D - 925 1004 - -
Cme10g00219 1026 Gene3D - 87 308 IPR027417 -
Cme10g00219 1026 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1 946 - -
Cme10g00219 1026 SMART DRBM_3 938 1001 IPR014720 -
Cme10g00219 1026 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 746 828 IPR011709 -
Cme10g00219 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 694 IPR027417 -
Cme10g00219 1026 Pfam Helicase conserved C-terminal domain 397 527 IPR001650 -
Cme10g00219 1026 Gene3D - 393 546 IPR027417 -
Cme10g00219 1026 SMART ultradead3 128 321 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00219 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 1966.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00189 Cme-Chr10:1278763 Cme10g00219 Cme-Chr10:1459864 0 dispersed
Cme10g00219 Cme-Chr10:1459864 Cme05g01746 Cme-Chr5:26469132 3.57E-47 dispersed
Cme01g01966 Cme-Chr1:27985446 Cme10g00219 Cme-Chr10:1459864 7.32E-94 transposed
Cme01g02180 Cme-Chr1:30656170 Cme10g00219 Cme-Chr10:1459864 1.93E-85 transposed
Cme06g02253 Cme-Chr6:29527442 Cme10g00219 Cme-Chr10:1459864 8.85E-77 transposed
Cme07g01443 Cme-Chr7:20124719 Cme10g00219 Cme-Chr10:1459864 1.63E-10 transposed
Cme07g02141 Cme-Chr7:25939838 Cme10g00219 Cme-Chr10:1459864 9.34E-54 transposed
Cme10g00219 Cme-Chr10:1459864 Cme02g01706 Cme-Chr2:24120225 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00219 Cme_Chr10 FPKM 0.0 0.0 0.348257 0.190465 0.604895 0.38603 0.613523 0.463215 0.325054 0.748249