Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00228 ATGACTTCCAGCGGCGGAGGCGGCGAGGTTGAAGTCAAGGGAGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTTGCAATCTTCTCTCCTAAGTCTGCACAAATTTTGACTACTCTTCCCGGTCACAACGCCTCTGTAAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCATTTAGAGCCAAGCAATTCAAGTCTCATTATCTACTTTCTGGTGACTCTGATGGTGCCATTCATTTATGGGAGTTGTCTCTTCTGGACCAGAAGTGGAGAAATGTTTTGCAACTACCAAAATCACACAAGAAAGGCATCACATGTATTGCTGCACATGTAATTTCTGAAACGGTGGTAATTTTTGCGTCTGCTTCTTCAGATGGTTCAGTTTGTGTTTGGGAGGTTGCTTTTCCGTCTACGAATGAAGGTGATTGTACATTGTTGTTGCTGGACACGCTCGTGGTTGGATCAAAATCTATGGTGGCACTTTCATTAGCAGAGTTGCCTGGGAATGTCGGTCGTATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTGCATGCAGTTTATTAAGGCTTGTGAGCTCAAAGGGCATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGGAAAAATGGAGAAGCAAACAACATTATGCTTGTGAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCCTCAGCCGACATAAACGGGGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACCATTGACTTACCAGGTATCATTAGAGTCACTTTTGATCGGTCATGAGGATTGGGTATATTCAGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGTTCCGTATCAATCTGAAAGCATCCTGTCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAATTAAGTCATTGTGCTCTAGGGTTTTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTACCAGTTCAGATAACTGGAAACCTCAAAAAGTTCCCTCAGGACATTTTGCTGCTGTCATGGACATTTCATGGGCCAGATCTGGTGATTATCTAATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAGTGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAAGTTCATGGTCATGATATTAATTGTGTCACCATAATACAAGGGAAGGGGAACCATCGGTTTGTGAGCGGAGCTGAGGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACCCTGCAGAACGTTGTGGCCACTGAAGATCACCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCTCTTGGCCTTTCACAGAAACCTATTTATGTTCACTCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTCGAAACCATTCCCGATGCAGTTCCTGTCATTCTTACTGAACCTCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATAACAAGGGGAAGCTAGTTGCTTCATCCTGCAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACGATAACGCAAATGGAGTTTTCCAATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTCTCTGTTTTCAAAATCCACGGAACAGGCTCTGATGAGATCCACCATGAGCTTATATCTAGGCAGGAGGCACATAGAAGAATCATATGGTCATGCTCTTGGAACCCACATGGTCATGAGTTTGCCACTGGCTCTAGGGATAAAACTGTGAAGATATGGGCTGTGACACCTGAATCTTCAGTTAAGCAGCTAACAACTCTATCACAGTTCAAATCTAGTGTCACCGCTTTATCGTGGGTCGGTCTCGACTCCAAGAGCAATGGATTCCTTGCAATTGGAATGGAAAATGGCCTTCTTGAGTTGTGGAATTTGTCTATTAAAAGAACAGATAACATTTACTCAAATGTAGTTGCTTCGGTCGCCATACGTCTGGATCCATTTGTGTGCCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGAGTGGCGAAGAGTGCAGGAAGCTGCAGTTCGCATCCTGTGGCACTGATCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2529 44.17 MTSSGGGGEVEVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKQFKSHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHKKGITCIAAHVISETVVIFASASSDGSVCVWEVAFPSTNEGDCTLLLLDTLVVGSKSMVALSLAELPGNVGRMVLAMGGLDNKIHLYCGKRTGECMQFIKACELKGHTDWIRSLDFSLPMGKNGEANNIMLVSSSQDRGIRIWKMALHGSSADINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGVPYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGTSSDNWKPQKVPSGHFAAVMDISWARSGDYLISVSHDQTTRIFSPWKSVNSLEGGSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNVVATEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDNKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQFSVFKIHGTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTPESSVKQLTTLSQFKSSVTALSWVGLDSKSNGFLAIGMENGLLELWNLSIKRTDNIYSNVVASVAIRLDPFVCHVSSVNRLAWKEPEKSGEECRKLQFASCGTDHCVRVFEVNVSV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1521716 1527269 - MELO3C012277.2.1 Cme10g00228 339114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00228 842 Gene3D - 4 175 IPR015943 GO:0005515
Cme10g00228 842 PRINTS G protein beta WD-40 repeat signature 88 102 IPR020472 -
Cme10g00228 842 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Cme10g00228 842 PRINTS G protein beta WD-40 repeat signature 711 725 IPR020472 -
Cme10g00228 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 692 733 IPR001680 GO:0005515
Cme10g00228 842 Gene3D - 292 403 IPR015943 GO:0005515
Cme10g00228 842 Gene3D - 404 538 IPR015943 GO:0005515
Cme10g00228 842 ProSitePatterns Trp-Asp (WD) repeats signature. 88 102 IPR019775 -
Cme10g00228 842 Pfam WD domain, G-beta repeat 308 351 IPR001680 GO:0005515
Cme10g00228 842 Pfam WD domain, G-beta repeat 409 446 IPR001680 GO:0005515
Cme10g00228 842 Pfam WD domain, G-beta repeat 115 150 IPR001680 GO:0005515
Cme10g00228 842 Pfam WD domain, G-beta repeat 694 723 IPR001680 GO:0005515
Cme10g00228 842 Pfam WD domain, G-beta repeat 222 263 IPR001680 GO:0005515
Cme10g00228 842 Pfam WD domain, G-beta repeat 53 100 IPR001680 GO:0005515
Cme10g00228 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Cme10g00228 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 447 IPR001680 GO:0005515
Cme10g00228 842 Gene3D - 539 682 IPR015943 GO:0005515
Cme10g00228 842 PANTHER ELONGATOR COMPLEX PROTEIN 2 9 840 - -
Cme10g00228 842 Gene3D - 683 841 IPR015943 GO:0005515
Cme10g00228 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 692 723 - -
Cme10g00228 842 PANTHER WD REPEAT-CONTAINING 9 840 - -
Cme10g00228 842 Gene3D - 176 289 IPR015943 GO:0005515
Cme10g00228 842 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 37 729 IPR011047 -
Cme10g00228 842 SMART WD40_4 51 101 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 361 400 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 408 447 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 459 500 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 685 724 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 730 773 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 636 675 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 301 351 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 589 633 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 790 837 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 216 263 IPR001680 GO:0005515
Cme10g00228 842 SMART WD40_4 108 151 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00228 K11374 ELP2; elongator complex protein 2 - csv:101209018 1674.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00228 Cme-Chr10:1521716 Cme04g02399 Cme-Chr4:30675677 5.33E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00228 Cme_Chr10 FPKM 24.676575 25.47187 29.86474 29.041882 27.205713 25.956642 29.463957 41.467045 43.6633 49.970638