Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00230 ATGGCAAAAATTCCTTCAATTTCCCTGTTTTTTCTCCTCTGCAACCTATGCCTTTCTATGGCTTCTTTGAACAATGAAGGCAATGCGCTTTTATCATTCAAACAATCCATTACTGAAGACCCGGAGGGATGTCTTAGCAACTGGAATTCTTCAGATGAAACTCCATGTAGTTGGAATGGAGTTACATGCAAAGATCTAAGAGTTGTTTCTCTTAGTATTCCTAGGAAGAAACTTAATGGGGTTCTTTCTTCTTCTCTAGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTGAGGAGTAATAAACTCCATGGAACTTTGCCAGTGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTATGGAAATTCCTTCACTGGGTCTGTTCCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTGGATTTGTCTCAGAATTTCCTTAATGGGTCATTGCCTGTTTCCTTAATGCAATGTACAAGGTTGAGAATTCTTGATCTTAGTCAGAATAATTTTACTAATTCTCTGCCTATTGGGTTCGGTTCCTCTTTGAATTTCCTGGAAACGTTGGATCTTTCTTATAATAAGTTTAATGGTTCAATTCCAATGGATATTGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCACCCAGCCTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGGCCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGACCGCCGTTGAAGAACCCATGTTCTTCCGAAACTCCGGGCGCGAGTTCGCCGTCCTCGTTCCCTTTTTTCCCAGACAATTATCCCCCTGGGAGTTCTGAGGGTAATGGTAATAAGTTTGACAAAGGGGGGTTGAGTAAGAGCACTTTAGTTGCAATAATCATAGGCGACATTGTAGGTATTTGCCTCATCGGTTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGATTTGAGAAGGGTGAGAAAGGAAGAAAGGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATTGAGCAGTTTGATTTGGTACCACTGGATTCACAAGTGACATTTGATCTTGACGAACTTCTCAAGGCATCAGCATTTGTTTTGGGAAAAAGTGGTATCGGGATCGTGTATAAAGTCGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGTGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAGGTTGAGGCATCCAAATGTTGTCAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTACGATTACATCCCAAATGGGAACCTTGCATCTGCCGTTCATGGGAAGCCCGGAACAACTTCGTTTACACCTCTACCATGGTCTGCTCGGTTTGGAATCATGAAAGGCATTGCAAAAGGGTTAGTTTACTTGCACGAGTATAGCCCCAAAAAGTACGTTCATGGTAATTTGAAAACAAACAACATACTTCTTGGACACGACATGACACCAAAAATTTCTAATTTCGGGCTAGCCCGCCTTGTTAACATTGCTGGAGGATCACCAACCGTGCAATCGAGCCATATAGCAGAGGAAAAATCACAAGAGAAACAACTAAAGTCTGCCACCTCTGAAGCCAGTACGTTCAGTTCTAGTATGAGTACTTACTACCAAGCCCCTGAAGCATTAAAAGTCGTAAAGCCATCACAGAAATGGGACGTTTACTCATACGGTGTGATATTACTCGAAATGATCACCGGAAGGTTGCCCATAGTTCAAGTGGGAGCCTCAGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAAGAAAAGAAGCCGCTTTCAGACGTGATAGACCCGTCGTTGGCTCCGGACGACGATGCTGACGAGGAGATCATAGCGGTTTTGAAGATAGCATTAGCTTGTGTTCAAAATAGTCCAGAAAGAAGACCTGCAATGAGGCATGTTTGTGATGCATTGAGCAAGTTGGCTGTCACTCCAAACTAA 2154 41.55 MAKIPSISLFFLLCNLCLSMASLNNEGNALLSFKQSITEDPEGCLSNWNSSDETPCSWNGVTCKDLRVVSLSIPRKKLNGVLSSSLGFLSELRHVNLRSNKLHGTLPVELFQANGIQSLVLYGNSFTGSVPNEIGKLKNLQILDLSQNFLNGSLPVSLMQCTRLRILDLSQNNFTNSLPIGFGSSLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPPSLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGNKFDKGGLSKSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGEKGRKDCLCFQKGESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGRLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAVHGKPGTTSFTPLPWSARFGIMKGIAKGLVYLHEYSPKKYVHGNLKTNNILLGHDMTPKISNFGLARLVNIAGGSPTVQSSHIAEEKSQEKQLKSATSEASTFSSSMSTYYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQNSPERRPAMRHVCDALSKLAVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1531870 1534812 - MELO3C012275.2.1 Cme10g00230 339116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00230 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 16 715 - -
Cme10g00230 717 SUPERFAMILY L domain-like 25 278 - -
Cme10g00230 717 Gene3D Transferase(Phosphotransferase) domain 1 486 716 - -
Cme10g00230 717 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cme10g00230 717 SUPERFAMILY Protein kinase-like (PK-like) 415 709 IPR011009 -
Cme10g00230 717 PANTHER OS05G0588300 PROTEIN 16 715 - -
Cme10g00230 717 CDD STKc_IRAK 416 712 - -
Cme10g00230 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Cme10g00230 717 Gene3D Ribonuclease Inhibitor 22 182 IPR032675 -
Cme10g00230 717 MobiDBLite consensus disorder prediction 280 313 - -
Cme10g00230 717 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Cme10g00230 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00230 717 SMART LRR_typ_2 186 210 IPR003591 -
Cme10g00230 717 SMART LRR_typ_2 162 185 IPR003591 -
Cme10g00230 717 SMART LRR_typ_2 137 161 IPR003591 -
Cme10g00230 717 SMART LRR_typ_2 89 113 IPR003591 -
Cme10g00230 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme09g01420 Cme10g00230 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00230 Cme-Chr10:1531870 Cme10g00646 Cme-Chr10:4122792 0 dispersed
Cme03g00089 Cme-Chr3:1304999 Cme10g00230 Cme-Chr10:1531870 0 transposed
Cme06g01373 Cme-Chr6:11927218 Cme10g00230 Cme-Chr10:1531870 4.73E-139 transposed
Cme08g01532 Cme-Chr8:14833270 Cme10g00230 Cme-Chr10:1531870 1.09E-139 transposed
Cme11g00706 Cme-Chr11:8397833 Cme10g00230 Cme-Chr10:1531870 8.11E-148 transposed
Cme11g01420 Cme-Chr11:21052700 Cme10g00230 Cme-Chr10:1531870 1.03E-42 transposed
Cme10g00230 Cme-Chr10:1531870 Cme09g01420 Cme-Chr9:19407451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65186 PF00069 Pkinase 1.20E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00230 - - csv:101215811 1369.37