Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00236 ATGAACAATATGTCGCTGACTGATTGCGGATTTTACACAGTTAAAAACTGCTCGGGACAGCCTAAAATCCAGCTGAGTCGTGAAAAAGAATTATGGTTTGATGTTGTTGCCATATCTCAGGCCAATGTCATCCATATCGATGACCAAGAACTTCAGAAGCGAATAACTGCTCGCGATTGCACTATTCTGGATGATCTAGCTCTTCCAATGTCTTCTTTATCTTCTTTATCCACAGATAATAATCTTACTATGTATCATTGCACAGATAAGCCTATAGACGCTTTACCCCTTTTCATTAGTTCATTTAGTTGCCCTGGTTATTACACATACATCAACACTAGTGCTTCACCCAACTGTCCCACTTCCAAGTCTAAATTTGTTGTTCCAGTTCGTCCCATTGGTCCCAATAACTCAGCTGTTGAGTTTACTTCTAATTTCCAACTTCAAGTAACCATATCCCTTCCTTGCCAGCAATGTCTTCAGAGAGGAGGCCGATGCTCGGATACCCAAGGATACATCGTCTGTGAAGTTGAACCTAACATATCTCCTAAGATTTGGGCGTTTGCACTAGGTGGATATTCAATCCACACTCCCAAGCGATACACTTACTCAAAGCTAAAGAAAATCACAGACTCCTTCAAGAACAAGCTTGGCCAAGGAGGATTCAGCTCTGTCTACAAAGGGAAATTACCCAATGGCTGTGAAGTGGCAGTGAAACTACTGAATGAATGCACAGAAAACGGTGAAGACTTCATGAATGAAGTCGTTAGCATCACAAGAACTTCGCATGTAAACATAGTCAACCTTTTAGGTTTCTGCTACGAACAGGGGAAAAGAGCATTGGTTTATGAGTATATGCCTAAAGGGTCATTAGATAAGTACATTTTTCACAGAGGGCAACAAAAAGAAAATGAAGAAGTTTTGGATTGGAAAATGTTGCATAGCATAGTTATGGGGGTAGCACGAGGATTAGAGTACTTGCATCAAGGCTGCAACACGAGGATTTTGCATTTTGACATCAAACCACACAACATTCTTTTGGACGATGACTTCTGTCCCAAAATCTCGGATTTCGGGCTTGCTAAGCAATGCAAGGCTAGAGAGAGTCACGTGTCGATGACGGGTGCAAAGGGGACTGCGGGATTTATGGCGCCAGAAGTAATGTATAGAAACTTTGGCAAAATTTCGCACAAGTCTGATGTTTATAGCTTTGGAATGTTGGTTCTTGAGATGGTGGGTGAAAGAAAGAGACCACATGAATTAGGAGTTGGGGAGATCAGTAAAGAAGAGTACTTTCCGGATTGGATATATAAGGACTTGGGAAGAAGTGGAATAGATGGAGCGCATTGGTGGGGAAGAACAGAGGAAGAACAAGAAATGGCAAGAAAAATGATCATTGTCGGATTGTGTTGTATACAGACGTTGCCGGAGGATAGGCCATCAATAACCGATGTGGTTGCGATGTTGGAAGGGAGTGTTGATGACTTGCAAATTCCGGCCAAGCCAACCTTATTTGGACCTCCTGCCATCTTTCTTCATCCTTCTTCTTCTTCTTCCTCTCCTTCATCCTTGTAA 1575 42.16 MNNMSLTDCGFYTVKNCSGQPKIQLSREKELWFDVVAISQANVIHIDDQELQKRITARDCTILDDLALPMSSLSSLSTDNNLTMYHCTDKPIDALPLFISSFSCPGYYTYINTSASPNCPTSKSKFVVPVRPIGPNNSAVEFTSNFQLQVTISLPCQQCLQRGGRCSDTQGYIVCEVEPNISPKIWAFALGGYSIHTPKRYTYSKLKKITDSFKNKLGQGGFSSVYKGKLPNGCEVAVKLLNECTENGEDFMNEVVSITRTSHVNIVNLLGFCYEQGKRALVYEYMPKGSLDKYIFHRGQQKENEEVLDWKMLHSIVMGVARGLEYLHQGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKQCKARESHVSMTGAKGTAGFMAPEVMYRNFGKISHKSDVYSFGMLVLEMVGERKRPHELGVGEISKEEYFPDWIYKDLGRSGIDGAHWWGRTEEEQEMARKMIIVGLCCIQTLPEDRPSITDVVAMLEGSVDDLQIPAKPTLFGPPAIFLHPSSSSSSPSSL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1554608 1556720 + MELO3C012270.2.1 Cme10g00236 339122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00236 524 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 7 190 - -
Cme10g00236 524 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 197 510 - -
Cme10g00236 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Cme10g00236 524 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 190 IPR045874 GO:0004672
Cme10g00236 524 Gene3D Phosphorylase Kinase; domain 1 191 285 - -
Cme10g00236 524 SMART serkin_6 211 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00236 524 SUPERFAMILY Protein kinase-like (PK-like) 194 490 IPR011009 -
Cme10g00236 524 Pfam Protein tyrosine and serine/threonine kinase 213 488 IPR001245 GO:0004672|GO:0006468
Cme10g00236 524 ProSitePatterns Protein kinases ATP-binding region signature. 217 239 IPR017441 GO:0005524
Cme10g00236 524 PANTHER RUST RESISTANCE KINASE LR10-RELATED 197 510 IPR045874 GO:0004672
Cme10g00236 524 ProSiteProfiles Protein kinase domain profile. 211 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00236 524 Gene3D Transferase(Phosphotransferase) domain 1 286 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00345 Cme-Chr4:2746282 Cme10g00236 Cme-Chr10:1554608 5.30E-88 dispersed
Cme10g00236 Cme-Chr10:1554608 Cme12g01859 Cme-Chr12:24862478 5.04E-176 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65187 PF07714 PK_Tyr_Ser-Thr 3.90E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00236 - - csv:101210246 897.501