Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00237 ATGGTGTTGTCAAATCTCCCCATCTTCATTTTCATTCTCGTCCTCCTAACCCCCTCCGTGGCTGTCGACTTCCACTTCGAGGCCTGCCGCCAGCCGATGACCTGTGGCGACAATCAAACAATTCAATACCCATTTTACATCCACAATCGCCAACGGTCGTTTTGTGGGTACCCGGGATTTCAGCTGAAATGTCATCAAAACGGCCACCCGATCCTTCATCTCGCCGGTAGGGATTTTTCCGTCCGCAGTATTTCATACGAAGAACACTCCCTCCGCCTCTCCGACCACGCTGTTTCATCAGCGGCTGAGTGTAGTGCTCTGATTCGAAGCCTCTCTGTTTTGACAAACGAACGGTTCCACCTCGGGGACGGACAGGACGGCATTTGCGGCGGAGAGGAAAGCCGGGATGAGGCGGAGAGAAATGGGTTGGTAGTGGAATGGACGGCCGGAGAGTGTAGATTTTGTAACAAGAGTGGTGGGTACTGTGGATTTGATGACTCGACTCATTTTTTCAAGTGTTATTGTCCTGATCGGCCTCATGCTTTTCATTGTACTCCGCCTCCGCCGGGTGCTGGATTCTCGGGTGTAATTCTGCTTTTGTTATTATTTGCTCTTTGGTACCGCAGAAGAAGGCGGCCTGCTCCGAATATCCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTTGACGTAGATGACGGTGGTGGTGTGTGCTTTGAAGTTCCTGTTTTCTCATATGCCGAACTCGAGACGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGCGATGGTGGTTTTGGAACCGTGTACCACGGCAAACTCCATGATGGCCGGGAAGTTGCTGTGAAACGCCTTTATCAACATAACTATAGACGAGTAGAGCAGTTCATGAATGAGGTTAAAATTCTCACCCGCTTTCGCCATAAGAATCTTGTCTCCCTTTATGGATGTACCTCAAAACGCAGTCGTGAACTTCTCCTCGTTTATGAATTTGTTCCAAATGGCACTGTTGCTGATCATCTCCATGGAGAACGGGCAAGTTCTAGTTTGCTCACGTGGCCTATTCGGATGAACATTGCCATTGAAACAGCAAGTGCTTTAGTTTATCTCCATGCTTCGGATATCATTCATCGTGATGTGAAGACTACTAATATTCTCTTGGACAATAATTTTTCTGTCAAAGTTGCTGATTTTGGACTCTCTAGATTGTTCCCAAACGATGTTAGTCATGTCTCAACTGCTCCTCAAGGGACCCCTGGTTATGTGGATCCGGAGTATTACCAGTGTTATCAGCTTACAACCAAGAGTGATGTTTATAGTTTCGGCGTCGTATTAATCGAACTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGACATGAGATTAACTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGGTTGATCCATGCCTTGGGTATCAATCGGATGAAAACGTCAGACGGATGATAATGGGAGTGGCCTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGAAGACCTACAATGGAAGAAGCCTTGGAAACTTTGAAGAGGATTGAGAATGGGGAAGAAAGTGAGAATTTGCTAGATAATAGTGCATTGCTGAAGAGCTATGATCCAACTCCTTCTCCAGAGTATGATGAGATTCAATTGTTGAAGAACAAAACGCAGCAGTTGTTGTCCCCTACTTCTGTTGCTGATAAATGGATAAGCTCAACTTCATTTGTTAGTGCTTCAACTTCAATATCATCTAAGTCCTAA 1800 45.28 MVLSNLPIFIFILVLLTPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCGYPGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTNERFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCPDRPHAFHCTPPPPGAGFSGVILLLLLFALWYRRRRRPAPNILTRNISCEPYSKFDVDDGGGVCFEVPVFSYAELETATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILTRFRHKNLVSLYGCTSKRSRELLLVYEFVPNGTVADHLHGERASSSLLTWPIRMNIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGLSRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELVDPCLGYQSDENVRRMIMGVAWLAFLCLQQDKERRPTMEEALETLKRIENGEESENLLDNSALLKSYDPTPSPEYDEIQLLKNKTQQLLSPTSVADKWISSTSFVSASTSISSKS 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1558148 1563242 + MELO3C012268.2.1 Cme10g00237 339123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00237 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Cme10g00237 599 Gene3D Transferase(Phosphotransferase) domain 1 334 551 - -
Cme10g00237 599 Pfam Wall-associated receptor kinase C-terminal 124 177 IPR032872 -
Cme10g00237 599 Gene3D Phosphorylase Kinase; domain 1 234 333 - -
Cme10g00237 599 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Cme10g00237 599 Pfam Protein kinase domain 258 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00237 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 121 IPR044652 -
Cme10g00237 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 135 584 IPR044652 -
Cme10g00237 599 SUPERFAMILY Protein kinase-like (PK-like) 242 557 IPR011009 -
Cme10g00237 599 CDD STKc_IRAK 263 532 - -
Cme10g00237 599 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Cme10g00237 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 121 - -
Cme10g00237 599 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 135 584 - -
Cme10g00237 599 ProSiteProfiles Protein kinase domain profile. 257 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00237 599 SMART serkin_6 257 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00237 Cme-Chr10:1558148 Cme12g01858 Cme-Chr12:24854691 2.70E-13 dispersed
Cme03g00081 Cme-Chr3:1163259 Cme10g00237 Cme-Chr10:1558148 5.42E-156 transposed
Cme10g00468 Cme-Chr10:2959367 Cme10g00237 Cme-Chr10:1558148 3.68E-86 transposed
Cme10g00237 Cme-Chr10:1558148 Cme02g01727 Cme-Chr2:24275353 3.34E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65188 PF00069 Pkinase 1.60E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00237 - - csv:101216540 779.245