Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00238 ATGGCTTCCAGAGAAGGAAGACGTCATCATAATCATCGTCATCACAATCTGGTGCCTCTTGCTGCTTTAATTAGTAAAGAGGTGAGGAATGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAAGGGGAAGACTACTTTCTCATGAAAACTGATTGTCAGCGAGTTCCTGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCTCTTCCCCGTGGTCTGGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCTTTGGTTGCTGGATTTGTGAAGACCGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCGACATTTGTGATCATCGATGGATGGACGGTAACAGTAGCGTCAGTTGGCGATTCTCGATGTATTTTAGATACTCAAGGTGGTGCCGTCTCTGCTTTAACGGTTGATCATCGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGTATTGTTGGCGGTGCTGAGATCGGTCCACTCCGTTGTTGGCCAGGAGGCTTATGCCTTTCTCGATCCATTGGAGACATGGATGTTGGAGAATTTATAGTTCCAATTCCATTTGTGAAACAAGTAAAGTTACCAAATGCAGGTGGGAGGCTTATAATTGCTTCTGACGGCATCTGGGATGCCTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTTGTAGACATCATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAATCTCCCAGTTCTAATAAGTTATCGAAGAGGCTTTCGGCTATAGGTTTCGTGGAAGAACTATTCGAAGATGGCTCCGCTATGCTGGCTGAAAGGCTTGGAACTGTAGAGTTGAGTGGATCTGGACATGGGACACCAAACATGTTCACTTGTGTTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGATGCCATGGAAGGAAAACGTCCCAGCGGGGTAAGAGTGGCCTAG 1302 46.31 MASREGRRHHNHRHHNLVPLAALISKEVRNERLEKPTVRYGNAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLPNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSPSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPNMFTCVVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1567140 1571164 + MELO3C012267.2.1 Cme10g00238 339124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00238 433 SMART PP2C_4 29 299 IPR001932 -
Cme10g00238 433 Pfam Protein phosphatase 2C 65 286 IPR001932 -
Cme10g00238 433 SMART PP2C_SIG_2 34 301 IPR001932 -
Cme10g00238 433 Gene3D - 35 308 IPR036457 -
Cme10g00238 433 PANTHER ALPHABET, ISOFORM E-RELATED 8 433 - -
Cme10g00238 433 SUPERFAMILY PP2C-like 46 301 IPR036457 -
Cme10g00238 433 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 8 433 - -
Cme10g00238 433 CDD PP2Cc 48 301 IPR001932 -
Cme10g00238 433 ProSiteProfiles PPM-type phosphatase domain profile. 32 301 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00048 Cme-Chr2:430735 Cme10g00238 Cme-Chr10:1567140 0 dispersed
Cme07g00366 Cme-Chr7:2363742 Cme10g00238 Cme-Chr10:1567140 2.70E-175 dispersed
Cme10g00238 Cme-Chr10:1567140 Cme08g00077 Cme-Chr8:529928 2.04E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00238 - - csv:101216777 838.565