Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00239 ATGGCGGCTTCCACTTGGCTGTCGCATTTTGCTCTTTTTGTATCTATCCTCTACTTTACATGTGTTTATGCCTCTTCGAACCTAGATTTAGACGCTTTAATGGCGTTCAAAGCAGCTTCTGATAAAGGGAACAAGCTAACCACATGGAACTCTACTTCTAACCCATGTGCTTGGGATGGTGTTTCGTGCCTCAGAGACAGGGTCTCGAGGTTGGTTCTCGAGAATCTTGATCTTACAGGCTCTATTGGACCTCTTACTGCTTTGACTCAGTTACGAGTTCTGAGTCTCAAGCGGAACCGTCTCTCTGGTCCCATTCCCGATCTCTCCAACTTCAAAGCTCTCAAACTTGTATTTCTTTCGTACAATGCATTTTCCGGTAACCTCCCGGGTTCTCTTCTGTCCCTCGTCCGGCTTTACCGTCTCGATCTCTCTCACAATAACCTGACCGGAGAGATACCGGCTTCTGTTAACCGTCTGACTCATCTTCTCACTCTCCGGCTGGAAGATAACGGGTTTTCTGGTCCCATTTTGGAACTGAACCTTCCGAATCTTCAGGACTTCAATATTTCGAAGAATCGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGGCATTTCCTGAGTCTTCTTTCGGACAGAACATGGGTTTGTGTGGATCTCCTCTTCAGAGTTGCAAGAGCATTGTCAGTAACCCGACGGAACCCGGATCCGAAGGGGCAATTGCTTCACCCATTACACCGCCGCGGAACCTCACGGTTTCATCTTCTCCGACTTCCCTTCCCGACGTTACAGCCGAAACAAAGCCGGAAAATACCCACCACCATGGCGCGGGAAAGATAGGTTCTCTAGCTCTAATCGCTATAATTCTTGGCGACGTTGTGGTGTTAGCGTTGGTCTCGCTTCTTCTATACTGCTATTTCTGGAAAAACTCTGCTGATAAAGCCAGAGAAGGGAAGGGCTCGTCGAAGCTTCTTGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATATCCAGCTCAGACAGGAACTGAGAGAGGCCGAATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCTGCGGAAATGCTTGGAAAAGGTGGGTTCGGAACTTCGTACAAGGCGATTCTGGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCGCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCACATGGAAGTACTGGGAAGGTTAAGACATGCAAATATCGTAAGCTTGAGAGCTTACTATTTTGCTAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCATGGAAACAGAGGCCCTGGACGAACGCCGTTGGATTGGACAACGAGGTTGAAGATCGCCGCTGGAGCAGCTAGAGGATTGGCTTTTATTCACAATTCCTGCAAGTCCCTCAAGCTCGCACATGGCAATGTTAAATCCACCAACGTTCTTTTGGACCAATCCGGAAATGCTCGAGTCTCTGATTTCGGATTGTCCCTTTTCACTCCCCCTTCCACTCCCAGAACCAACGGCTACCGTGCTCCGGAATGCGGTGATGACCGAAAGCTGACACAGAAATCCGACGTGTACTCATTTGGGGTTCTTCTCCTTGAGTTGCTGACAGGAAAGTGCCCCTCTGTCGTGGAGAACGGCGGACCAGGAGGCGGTGGATACGGCAGCGTGTTGGATTTGCCACGGTGGGTTCAGTCAGTGGTGCGAGAGGAATGGACAGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATTGCCTTGGCTTGCACATCGGCTTCGCCAGATCAACGGCCAAAGATGAGCCACGTGGTGAAGATGATCGACGAGCTCCGTGGGGTAGAGGTGTCGCCGTTCCATGACGGGTCTGACTCAGTGACGGAATCGCCGTCGGTGTCGGAGGGAACATGCGGCGGAGGAGGCAGTCAGTAA 2019 50.42 MAASTWLSHFALFVSILYFTCVYASSNLDLDALMAFKAASDKGNKLTTWNSTSNPCAWDGVSCLRDRVSRLVLENLDLTGSIGPLTALTQLRVLSLKRNRLSGPIPDLSNFKALKLVFLSYNAFSGNLPGSLLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNGFSGPILELNLPNLQDFNISKNRLSGEIPKSLSAFPESSFGQNMGLCGSPLQSCKSIVSNPTEPGSEGAIASPITPPRNLTVSSSPTSLPDVTAETKPENTHHHGAGKIGSLALIAIILGDVVVLALVSLLLYCYFWKNSADKAREGKGSSKLLESEKIVYSSSPYPAQTGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLKLAHGNVKSTNVLLDQSGNARVSDFGLSLFTPPSTPRTNGYRAPECGDDRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGSVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGGSQ 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1574589 1577523 + MELO3C012266.2.1 Cme10g00239 339125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00239 672 PANTHER - 23 655 - -
Cme10g00239 672 MobiDBLite consensus disorder prediction 651 672 - -
Cme10g00239 672 Gene3D Ribonuclease Inhibitor 179 226 IPR032675 -
Cme10g00239 672 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Cme10g00239 672 ProSiteProfiles Protein kinase domain profile. 363 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00239 672 Gene3D Transferase(Phosphotransferase) domain 1 439 651 - -
Cme10g00239 672 Pfam Protein tyrosine and serine/threonine kinase 367 636 IPR001245 GO:0004672|GO:0006468
Cme10g00239 672 MobiDBLite consensus disorder prediction 246 265 - -
Cme10g00239 672 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cme10g00239 672 MobiDBLite consensus disorder prediction 647 672 - -
Cme10g00239 672 CDD STKc_IRAK 369 640 - -
Cme10g00239 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 655 - -
Cme10g00239 672 SUPERFAMILY L domain-like 44 204 - -
Cme10g00239 672 MobiDBLite consensus disorder prediction 232 273 - -
Cme10g00239 672 Gene3D Phosphorylase Kinase; domain 1 337 438 - -
Cme10g00239 672 SUPERFAMILY Protein kinase-like (PK-like) 367 637 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02445 Cme-Chr4:31056209 Cme10g00239 Cme-Chr10:1574589 8.58E-174 dispersed
Cme08g00588 Cme-Chr8:3748630 Cme10g00239 Cme-Chr10:1574589 1.37E-113 dispersed
Cme10g00239 Cme-Chr10:1574589 Cme05g01954 Cme-Chr5:28090976 6.90E-171 dispersed
Cme10g00239 Cme-Chr10:1574589 Cme02g01293 Cme-Chr2:18860631 6.98E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65189 PF07714 PK_Tyr_Ser-Thr 4.30E-34 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00239 - - csv:101217010 1277.31