Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00240 ATGGAATCATCTTCCACAATCCTCCCCTTGGAATCTCCTATACTCATCTTTCTCTTCTTCCACAAGGCTATACGTGCTGAGCTTGATCACTTTCATACCGACGCTGTCCAGTTCGCCACTAACCACCAAACTACTGGGGATATTTCTCCCTTGTTGCACCGCTACCACTTCCTTCGAGCTGTTTATAAGCACCACTGTAAAGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCTGCGAGTGAAAAATGTGGCAACTACTTATTTCCTTGAACATGAAGGTGAAAGTGTTCTGTTTTGCCAATTGTTCGAGCTTCTGAATTCAAATGGGTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTCGTGTTAAAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTCCCGTTACTTACTAAGAAGTTTTCTTTTGAAGAACAGGCAGCATTAGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGATTTCTTCCTCTATATCTCCAGATGAGCATCAGATTATGTGCAAATGTCTAAGTAAAATTATCCCTGAGCAAAAGCTTCTTCAGAAGATAATATTTTCATGGATGGAGGGTGCAAAAACAGCTGATGCTGATCAAAGTTTGTATGACGACAATTTAGAGTTTCAATGTCTAGGCTCTCAGGTCCATGATCTTATATGCATGCCAGAGAAGGGGAGTGACACTTCTGAATCATCTAGAATTGGTAAAAGGAAATACGTGGAGCAAAATGCTTGCCCCATCAATGAAATATTATATTGGCATAATGCTATAAGAAAAGAACTAAATATCATCGCTGAGGCAGCTAGGAACCTACCTTTGTCTTCTGATTTTTCTGAGTTATCTGCACTTAAGGAGAGGCTGCACATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCAGAAGAAGAGATTCAATTTGATAAGCTTAGGCATTTGATTGAATGTATCCAAGCTGATAAAGTTAAGTGTGCTTCTGCTGAAATTCATAAAAAATTAAGTTCTCATGCCGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAAATGCATTTCAAGCTCAAGCTCATTTTTATGAGCTCTTGGCTTGGGTCTTTACAAGCTAAGAAGGTTCCTAAGAGGGTCCAAGTTCTTCCACTTGCTTGTAAGCATTTTGGACACCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCCTGAAATGGATAGAACGAGTCTTACCTTGGTTGGTAGAAACTCTTACTGAAAAAGAAGCAAGATCTTTTCTTCAGAACATGCAAATGGCAGCTCCAGTGTCGGATCATGCACTTGTTACACTATTTTATGGTTGGGCATGCAAAGGCCGACCCAGGAGCATTTGTTTATCTGTAAGTGCTATTGACCGTTGTCCTGAACTGATATTGACTGGGGATGAAGAATCATGCTCCTCCTTTTGTTCTGCCAGTGAAAAACTTCCATGCAATCTGGCAACTGAGTGTGCCAGGTCATCCAAGGGTGGGAAGGCAGTATGCCATGGCAACTCAAATGGCCGTCTTCCCTTGAAAAACCCAACCAAAAAACTTCAAATCACTCGTGTAAAACAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATCATGACAATAATTTAGGAATGAGATCTATGGCAGCAACAAAATCACTGCATTCTTTGTGTTTTGGTCTCTATGCTCCTCCTCTCAACTCCAGTCTTTTTAGTCTGGAAACGAATCCAATCTCTCTTGGCAGTGGTTATAACCCACAGCCTATTGATAACATATTTACATTTCATAAAGCAATAAGGAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATACTTTCTTTAGGCAATTTTGCGGTAGGTTTTATCTATTATGGGGCCTATATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGTCACTCTTATACATTAGACCACAAACAGGAGGAAGAGCTCTTTGAAGGTATTTCTAGTGCACTTTCTAAGCTGGCAGACCTTCGCAGAGACTTGAAAGGTAATAAAAAGTGTAATAACTCAAGTTGCATGAAGTTTCATACCTCTGATAGTTGTGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCTATTCGAGTTACACTTGACCAACATATTTTCCGTGAGGAATCAGAATTGTTGCCGTTGTTCCATACATATTTTTCTCTGGATGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCTACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGAACCTGCTACATCTCCACATCACGAGGAATCTGTCATTCATTTATCTGGAGGTTCTGATTCTCATGGCGTCTGTGACCAAAAAAATGAATCGATTTTCAAGCCAGGGTGGAAAGAGATTTTTAGGATGAATGAAAATGAACTCGAATCAGAAATAAGAAAGGTTGTCCAGGATTCAACCATTGACCCCAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGTTGGATAGCTTCACAGCAAATGCTACCCCAAGCCACTACAGGTGAAAACACAAATGCAAGAGATCTGATTGCAAATGCCCCATCATTTCGCGATTCCAAGGAACAGACTTTTGGCTGTGAGCATTATAAAAGAAATTGCAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGATAGGAAGGCTTCAACTGAAATGATGTGTATGCAATGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGCGGTGGTCTCTCTATGGGGAAATACTACTGTGGCATTTGCAAAGTTTTTGACGATGAAAGGGAAGTTTATCATTGTCCTTTTTGCAATCTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTCCATTGTATGACATGCAACTGTTGTTTGGCAATGAAGTTGGTTGATCACAAATGCCAAGAGAGGGGCCTAGAGACAAATTGCCCTATCTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTCGAGCTCTCCCTTGTGGCCATTTCATGCATTCGGCTTGTTTCCAGGCTTACACTTGTAGCCACTTCATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTTGGCATGCTTGACGCGTTACTAGCATTGGAAGTACTTCCTGAGGAATACAGGGAACGCTGTCAGGATATATTGTGCAACGATTGCTCCATGAAGGGGAAAGCGCGGTTCCATTGGCTCCACCATAAATGTGGAAGTTGTGGATCTTACAATACCAAGGTGATTAAGAAAGAGAAACCTTCAGTAGCTTTCCCTTTTGTGAAATAA 3657 40.88 MESSSTILPLESPILIFLFFHKAIRAELDHFHTDAVQFATNHQTTGDISPLLHRYHFLRAVYKHHCKAEDEVIFPALDLRVKNVATTYFLEHEGESVLFCQLFELLNSNGLEEGSYKRELSSRVKALQISICQHMFKEEEQVFPLLTKKFSFEEQAALVWKFLCSIPINMLEVFLPWISSSISPDEHQIMCKCLSKIIPEQKLLQKIIFSWMEGAKTADADQSLYDDNLEFQCLGSQVHDLICMPEKGSDTSESSRIGKRKYVEQNACPINEILYWHNAIRKELNIIAEAARNLPLSSDFSELSALKERLHIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIECIQADKVKCASAEIHKKLSSHADQIIKTIQKHFHDEEMHFKLKLIFMSSWLGSLQAKKVPKRVQVLPLACKHFGHQRQRELLYHSLCIMPLKWIERVLPWLVETLTEKEARSFLQNMQMAAPVSDHALVTLFYGWACKGRPRSICLSVSAIDRCPELILTGDEESCSSFCSASEKLPCNLATECARSSKGGKAVCHGNSNGRLPLKNPTKKLQITRVKQSACVPGLGVDHDNNLGMRSMAATKSLHSLCFGLYAPPLNSSLFSLETNPISLGSGYNPQPIDNIFTFHKAIRKDLEYLDNESVNLGDCNDTFFRQFCGRFYLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISSALSKLADLRRDLKGNKKCNNSSCMKFHTSDSCDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSLDEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEEPATSPHHEESVIHLSGGSDSHGVCDQKNESIFKPGWKEIFRMNENELESEIRKVVQDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENTNARDLIANAPSFRDSKEQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMQCLKVQPIGSVCTTPSCGGLSMGKYYCGICKVFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHFICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSMKGKARFHWLHHKCGSCGSYNTKVIKKEKPSVAFPFVK 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1578014 1586378 + MELO3C012265.2.1 Cme10g00240 339126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00240 1218 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 10 1209 - -
Cme10g00240 1218 Gene3D nmb1532 protein domain like 11 164 - -
Cme10g00240 1218 Gene3D nmb1532 protein domain like 272 392 - -
Cme10g00240 1218 ProSiteProfiles Zinc finger CHY-type profile. 963 1032 IPR008913 GO:0008270
Cme10g00240 1218 SMART ring_2 1099 1140 IPR001841 -
Cme10g00240 1218 Gene3D - 1170 1213 - -
Cme10g00240 1218 SUPERFAMILY RING/U-box 1098 1145 - -
Cme10g00240 1218 Pfam CHY zinc finger 970 1045 IPR008913 GO:0008270
Cme10g00240 1218 ProSiteProfiles Zinc finger CTCHY-type profile. 1035 1098 IPR017921 -
Cme10g00240 1218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1094 1143 IPR013083 -
Cme10g00240 1218 Pfam Hemerythrin HHE cation binding domain 626 787 IPR012312 -
Cme10g00240 1218 Pfam Hemerythrin HHE cation binding domain 18 146 IPR012312 -
Cme10g00240 1218 CDD Hr-like 16 144 - -
Cme10g00240 1218 Gene3D nmb1532 protein domain like 623 850 - -
Cme10g00240 1218 CDD RING-H2_Pirh2 1098 1141 - -
Cme10g00240 1218 ProSiteProfiles Zinc finger RING-type profile. 1099 1141 IPR001841 -
Cme10g00240 1218 CDD Hr-like 272 384 - -
Cme10g00240 1218 Pfam Zinc-ribbon 1146 1202 IPR039512 -
Cme10g00240 1218 SUPERFAMILY Zinc hairpin stack 1036 1091 IPR037275 -
Cme10g00240 1218 CDD Hr-like 630 786 - -
Cme10g00240 1218 SUPERFAMILY CHY zinc finger-like 964 1026 IPR037274 GO:0008270
Cme10g00240 1218 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 10 1209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01912 Cme-Chr2:25553183 Cme10g00240 Cme-Chr10:1578014 3.33E-07 dispersed
Cme06g00698 Cme-Chr6:4528503 Cme10g00240 Cme-Chr10:1578014 1.20E-37 dispersed
Cme08g01270 Cme-Chr8:9193516 Cme10g00240 Cme-Chr10:1578014 6.01E-13 dispersed
Cme10g00240 Cme-Chr10:1578014 Cme11g01843 Cme-Chr11:26636839 1.20E-37 dispersed
Cme10g00240 Cme-Chr10:1578014 Cme02g01729 Cme-Chr2:24301944 1.16E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00240 K16276 - csv:101217252 2332.37